Construct: ORF ccsbBroad304_01095

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF007585.1_s304c1, BRDN0000461165
Derived from:
ccsbBroadEn_01095
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
NFYC (4802)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_01095
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 4802 NFYC nuclear transcription facto... NM_014223.5 100% 100%
2 human 4802 NFYC nuclear transcription facto... XM_017001368.1 100% 100%
3 human 4802 NFYC nuclear transcription facto... XM_017001369.1 100% 100%
4 human 4802 NFYC nuclear transcription facto... XM_024447357.1 100% 100%
5 human 4802 NFYC nuclear transcription facto... NM_001142587.2 99.7% 99.7% 885_886insCAG
6 human 4802 NFYC nuclear transcription facto... NM_001142588.2 94.6% 94.6% 825_881del
7 human 4802 NFYC nuclear transcription facto... XM_006710660.3 94.6% 94.6% 825_881del
8 human 4802 NFYC nuclear transcription facto... XM_017001367.1 94.6% 94.6% 825_881del
9 human 4802 NFYC nuclear transcription facto... XM_017001366.2 94.3% 94.3% 1_60del
10 human 4802 NFYC nuclear transcription facto... NM_001142590.2 89.8% 89.8% 558_559ins102
11 human 4802 NFYC nuclear transcription facto... NM_001142589.2 88.6% 88.6% 175_176ins114
12 human 4802 NFYC nuclear transcription facto... XM_024447356.1 82.7% 82.7% 1_210del
13 human 4802 NFYC nuclear transcription facto... XM_006710662.3 79.5% 79.5% 1_258del
14 human 4802 NFYC nuclear transcription facto... XM_011541517.2 78.4% 78.4% 825_881del;944_1162del
15 human 4802 NFYC nuclear transcription facto... NM_001308115.2 76.3% 76.3% 886_1197del
16 human 4802 NFYC nuclear transcription facto... XM_006710658.3 76.3% 76.3% 886_1197del
17 human 4802 NFYC nuclear transcription facto... XM_006710661.2 76.3% 76.3% 886_1197del
18 human 4802 NFYC nuclear transcription facto... NM_001308114.1 73.1% 73.1% 825_881del;943_1254del
19 human 4802 NFYC nuclear transcription facto... XM_005270894.1 73.1% 73.1% 825_881del;943_1254del
20 human 4802 NFYC nuclear transcription facto... XM_011541516.1 73.1% 73.1% 825_881del;943_1254del
21 human 4802 NFYC nuclear transcription facto... XM_017001365.2 73.1% 73.1% 825_881del;943_1254del
22 human 4802 NFYC nuclear transcription facto... XM_024447354.1 73.1% 73.1% 825_881del;943_1254del
23 human 4802 NFYC nuclear transcription facto... XM_024447355.1 73.1% 73.1% 825_881del;943_1254del
24 human 4802 NFYC nuclear transcription facto... XM_017001364.2 72.9% 72.9% 1_60del;946_1257del
25 human 494127 LOC494127 NFYC pseudogene NR_036691.1 67.2% (many diffs)
26 human 4802 NFYC nuclear transcription facto... XM_005270895.4 61.5% 61.5% 1_258del;1083_1139del;1201_1512del
27 mouse 18046 Nfyc nuclear transcription facto... NM_001048168.2 92.7% 99.4% (many diffs)
28 mouse 18046 Nfyc nuclear transcription facto... NM_008692.4 92.7% 99.4% (many diffs)
29 mouse 18046 Nfyc nuclear transcription facto... XM_006502846.1 92.7% 99.4% (many diffs)
30 mouse 18046 Nfyc nuclear transcription facto... XM_017320024.1 92.7% 99.4% (many diffs)
31 mouse 18046 Nfyc nuclear transcription facto... XM_017320025.1 92.7% 99.4% (many diffs)
32 mouse 18046 Nfyc nuclear transcription facto... XM_006502849.3 85.7% 92.2% (many diffs)
33 mouse 18046 Nfyc nuclear transcription facto... XM_017320023.1 83.7% 89.8% (many diffs)
34 mouse 18046 Nfyc nuclear transcription facto... NM_001277095.1 82.4% 88% (many diffs)
35 mouse 18046 Nfyc nuclear transcription facto... XM_006502851.3 75.5% 80.8% (many diffs)
36 mouse 18046 Nfyc nuclear transcription facto... XR_001784106.1 49.6% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1071
ORF length:
1005
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatgtc cacagaagga ggatttggtg gtactagcag cagtgatgcc cagcaaagcc
121tacagtcgtt ctggcctcgg gtcatggaag aaatccggaa tttaacagtg aaagacttcc
181gagtgcagga actcccactg gctcgtatta agaagattat gaaactggat gaagatgtga
241agatgatcag tgcagaagcg cctgtactct ttgccaaggc agcccagatt tttatcacag
301agttgactct tcgagcctgg attcacacag aagataacaa gcgccggact ctacagagaa
361atgatatcgc catggcaatt acaaaatttg atcagtttga ttttctcatc gatattgttc
421caagagatga actgaaacct ccaaagcgtc aggaggaggt gcgccagtct gtaactcctg
481ccgagccagt ccagtactat ttcacgctgg ctcagcaacc caccgctgtc caagtccagg
541gccagcagca aggccagcag accaccagct ccacgaccac catccagcct gggcagatca
601tcatcgcaca gcctcagcag ggccagacca cacctgtgac aatgcaggtt ggagaaggtc
661agcaggtgca gattgtccag gctcagccac agggtcaagc ccaacaggcc cagagtggca
721ctggacagac catgcaggtg atgcagcaga tcatcactaa cacaggagag atccagcaga
781tcccggtgca gctgaatgcc ggccagctgc agtatatccg cttagcccag cctgtatcag
841gcactcaagt tgtgcaggga cagatccaga cacttgccac caatgctcaa cagattacac
901agacagaggt ccagcaagga cagcagcagt tcagccagtt cacagatgga cagcagctct
961accagatcca gcaagtcacc atgcctgcgg gccaggacct cgcccagccc atgttcatcc
1021agtcagccaa ccagccctcc gacgggcagg ccccccaggt gaccggcgac tgcccaactt
1081tcttgtacaa agtggttggt aagcctatcc ctaaccctct cctcggtctc gattctacgt
1141agtaatgagc tagcgctaac cggtggcgcg ttaagtcgac aatcaacctc tggatta

Download FASTA (ORF) (Full)