Construct: ORF ccsbBroad304_01391

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF009280.1_s304c1, BRDN0000406553
Derived from:
ccsbBroadEn_01391
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
RFC5 (5985)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_01391
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 5985 RFC5 replication factor C subunit 5 NM_007370.7 100% 100%
2 human 5985 RFC5 replication factor C subunit 5 XM_011538643.3 100% 100%
3 human 5985 RFC5 replication factor C subunit 5 XM_011538645.3 100% 100%
4 human 5985 RFC5 replication factor C subunit 5 NM_001206801.2 99.1% 98.8% 793_794insATATTACAG
5 human 5985 RFC5 replication factor C subunit 5 NM_001130113.2 93.8% 93.5% 0_1ins48;2_3insCAGGAACCTGCCCTG
6 human 5985 RFC5 replication factor C subunit 5 NM_181578.4 93.8% 93.5% 0_1ins48;2_3insCAGGAACCTGCCCTG
7 human 5985 RFC5 replication factor C subunit 5 XM_024449118.1 93.8% 93.5% 0_1ins48;2_3insCAGGAACCTGCCCTG
8 human 5985 RFC5 replication factor C subunit 5 XM_017019779.2 88.5% 85% (many diffs)
9 human 5985 RFC5 replication factor C subunit 5 NM_001130112.3 75% 75% 0_1ins255
10 human 5985 RFC5 replication factor C subunit 5 XM_024449119.1 75% 75% 0_1ins255
11 human 5985 RFC5 replication factor C subunit 5 NM_001346815.1 74.1% 73.8% 0_1ins255;538_539insATATTACAG
12 human 5985 RFC5 replication factor C subunit 5 NR_144504.1 47% 1_167del;748_751delAGTG;1192_2166del
13 mouse 72151 Rfc5 replication factor C (activ... NM_028128.1 86.4% 93.8% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1086
ORF length:
1020
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatgga gacctcagca ctcaagcagc aggagcagcc cgcggcgacc aagatcagga
121acctgccctg ggttgaaaaa taccggccac agaccctgaa tgatctcatt tctcatcagg
181acattctgag taccattcag aagtttatca atgaagaccg actgccacac ttgcttctct
241acggtccccc agggacaggc aagacatcta ccatcctagc ctgtgcgaaa cagctatata
301aagacaaaga atttggctcc atggtcttgg agctgaatgc ttcagatgac cgaggaatag
361acatcattcg aggaccgatc ctgagctttg ctagcacaag gacaatattt aagaaaggct
421ttaagctagt gatcttggat gaagcagacg ccatgactca ggacgcccag aatgccttga
481gaagagtaat tgagaaattc acagaaaata ccagattctg cctcatctgt aactatctgt
541caaagatcat ccctgccttg cagtcccgct gcacgaggtt tcggttcggt cccctgactc
601ctgaactcat ggttccccgc ctggaacatg tcgtggaaga agagaaagtt gatataagtg
661aagatggaat gaaagcacta gtcactcttt ccagtggaga catgcgtagg gctctgaaca
721ttttgcagag caccaatatg gcctttggga aggtgacaga ggagactgtc tacacctgca
781ccgggcaccc gctcaagtca gacattgcca acatcctgga ctggatgttg aatcaagatt
841tcaccacagc ctacagaaat attacagagt tgaaaactct gaaggggttg gcactgcatg
901atatcctgac agagatacac ttgtttgtgc atagagttga ctttccatct tcagttcgaa
961tacatttatt gaccaaaatg gcagacattg agtacaggct ttctgttggc accaacgaga
1021agatccagct gagctccctc attgctgcat ttcaagtcac cagagacctg attgttgcag
1081aggcctaccc aactttcttg tacaaagtgg ttggtaagcc tatccctaac cctctcctcg
1141gtctcgattc tacgtagtaa tgagctagcg ctaaccggtg gcgcgttaag tcgacaatca
1201acctctggat ta

Download FASTA (ORF) (Full)

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