Construct: ORF ccsbBroad304_01667

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF006433.1_s304c1, BRDN0000406159
Derived from:
ccsbBroadEn_01667
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
TGIF1 (7050)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_01667
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 7050 TGIF1 TGFB induced factor homeobox 1 NM_001278684.2 100% 100%
2 human 7050 TGIF1 TGFB induced factor homeobox 1 NM_003244.4 100% 100%
3 human 7050 TGIF1 TGFB induced factor homeobox 1 NM_173208.3 100% 100%
4 human 7050 TGIF1 TGFB induced factor homeobox 1 XM_017025958.1 100% 100%
5 human 7050 TGIF1 TGFB induced factor homeobox 1 NM_001278682.2 98% 96.7% (many diffs)
6 human 7050 TGIF1 TGFB induced factor homeobox 1 NM_173207.4 94.3% 93.3% (many diffs)
7 human 7050 TGIF1 TGFB induced factor homeobox 1 NM_001278686.2 92.6% 92.6% 0_1ins60
8 human 7050 TGIF1 TGFB induced factor homeobox 1 NM_001374396.1 92.6% 92.6% 0_1ins60
9 human 7050 TGIF1 TGFB induced factor homeobox 1 NM_001374397.1 92.6% 92.6% 0_1ins60
10 human 7050 TGIF1 TGFB induced factor homeobox 1 NM_170695.5 92.6% 92.6% 0_1ins60
11 human 7050 TGIF1 TGFB induced factor homeobox 1 NM_173209.3 92.6% 92.6% 0_1ins60
12 human 7050 TGIF1 TGFB induced factor homeobox 1 NM_173210.4 92.6% 92.6% 0_1ins60
13 human 7050 TGIF1 TGFB induced factor homeobox 1 NM_173211.2 92.6% 92.6% 0_1ins60
14 human 7050 TGIF1 TGFB induced factor homeobox 1 NM_174886.3 92.6% 92.6% 0_1ins60
15 mouse 21815 Tgif1 TGFB-induced factor homeobox 1 NM_009372.3 87.6% 89.7% (many diffs)
16 mouse 21815 Tgif1 TGFB-induced factor homeobox 1 XM_006524031.3 86.8% 88.9% (many diffs)
17 mouse 21815 Tgif1 TGFB-induced factor homeobox 1 XM_011246363.2 85.3% 87.6% (many diffs)
18 mouse 21815 Tgif1 TGFB-induced factor homeobox 1 NM_001164074.1 81% 83.8% (many diffs)
19 mouse 21815 Tgif1 TGFB-induced factor homeobox 1 NM_001164076.1 81% 83.8% (many diffs)
20 mouse 21815 Tgif1 TGFB-induced factor homeobox 1 NM_001164077.1 81% 83.8% (many diffs)
21 mouse 21815 Tgif1 TGFB-induced factor homeobox 1 XM_006524032.2 81% 83.8% (many diffs)
22 mouse 21815 Tgif1 TGFB-induced factor homeobox 1 NM_001164075.1 77.3% 78.6% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
882
ORF length:
816
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatgaa aggcaagaaa ggtattgttg cagcatctgg cagtgagact gaggatgagg
121acagcatgga cattcccttg gacctttctt catccgctgg ctcaggcaag agaaggagaa
181ggggcaacct acccaaggag tctgtgcaga ttcttcggga ttggctgtat gagcaccgtt
241acaatgccta tccttcagag caagaaaaag cgttgctgtc ccagcaaaca cacctgtcta
301cgctacaggt ctgtaactgg ttcatcaacg cccgccgcag gctcctccct gacatgctga
361gaaaggatgg caaagatcca aatcagttca caatttcccg ccgtggggcc aagatttctg
421aaacgagctc tgtggagtcc gtgatgggca tcaaaaactt catgccagct ctagaggaga
481ccccatttca ttcctgtaca gctgggccaa acccaaccct agggaggcca ctgtctccta
541agccgtcatc cccgggatca gttttggctc gtccatcagt gatctgccat accactgtga
601ctgcattgaa agatgtccct ttctctctct gccagtcggt cggtgtggga caaaacacag
661atatacagca gatagcggcc aaaaacttca cagacacctc tctcatgtac ccagaggaca
721cttgtaaatc tggaccaagt acgaatacac agagtggtct tttcaacact cctcccccta
781ctccaccgga cctcaaccag gacttcagtg gatttcagct tctagtggat gttgcactca
841aacgggctgc agagatggag cttcaggcaa aacttacagc taacccaact ttcttgtaca
901aagtggttgg taagcctatc cctaaccctc tcctcggtct cgattctacg tagtaatgag
961ctagcgctaa ccggtggcgc gttaagtcga caatcaacct ctggatta

Download FASTA (ORF) (Full)

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