Construct: ORF ccsbBroad304_01702

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF007126.1_s304c1, BRDN0000407446
Derived from:
ccsbBroadEn_01702
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
TPM2 (7169)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_01702
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 7169 TPM2 tropomyosin 2 NM_213674.1 100% 100%
2 human 7169 TPM2 tropomyosin 2 NM_001301226.2 94.7% 94.7% (many diffs)
3 human 7169 TPM2 tropomyosin 2 NM_001301227.1 93.3% 92.6% (many diffs)
4 human 7169 TPM2 tropomyosin 2 XM_017015090.2 93.3% 92.6% (many diffs)
5 human 7169 TPM2 tropomyosin 2 NM_003289.3 88.3% 87.3% (many diffs)
6 human 7169 TPM2 tropomyosin 2 XM_017015091.2 88.3% 87.3% (many diffs)
7 human 7169 TPM2 tropomyosin 2 XM_017015087.2 77.9% 69.3% (many diffs)
8 human 7169 TPM2 tropomyosin 2 XM_017015088.2 77.9% 69.3% (many diffs)
9 human 7169 TPM2 tropomyosin 2 XM_017015092.2 75% 75% 639_640ins213
10 human 7169 TPM2 tropomyosin 2 XM_017015093.2 75% 75% 639_640ins213
11 mouse 22004 Tpm2 tropomyosin 2, beta NM_001277876.1 92.9% 99.2% (many diffs)
12 mouse 22004 Tpm2 tropomyosin 2, beta NM_001277875.1 88.1% 94.3% (many diffs)
13 mouse 22004 Tpm2 tropomyosin 2, beta XM_006537780.1 86.7% 91.9% (many diffs)
14 mouse 22004 Tpm2 tropomyosin 2, beta NM_009416.4 82.1% 86.9% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
918
ORF length:
852
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatgga cgccatcaag aagaagatgc agatgctgaa gctggacaag gagaacgcca
121tcgaccgcgc cgagcaggcc gaagccgaca agaagcaagc tgaggaccgc tgcaagcagc
181tggaggagga gcagcaggcc ctccagaaga agctgaaggg gacagaggat gaggtggaaa
241agtattctga atccgtgaag gaggcccagg agaaactgga gcaggccgag aagaaggcca
301ctgatgctga ggcagatgtg gcctccctga accgccgcat tcagctggtt gaggaggagc
361tggaccgggc ccaggagcgc ctggctacag ccctgcagaa gctggaggag gccgagaagg
421cggctgatga gagcgagaga ggaatgaagg tcatcgaaaa ccgggccatg aaggatgagg
481agaagatgga actgcaggag atgcagctga aggaggccaa gcacatcgct gaggattcag
541accgcaaata tgaagaggtg gccaggaagc tggtgatcct ggaaggagag ctggagcgct
601cggaggagag ggctgaggtg gccgagagcc gagccagaca gctggaggag gaacttcgaa
661ccatggacca ggccctcaag tccctgatgg cctcagagga ggagtattcc accaaagaag
721ataaatatga agaggagatc aaactgttgg aggagaagct gaaggaggct gagacccgag
781cagagtttgc cgagaggtct gtggcaaagt tggagaaaac catcgatgac ctagaagaga
841ccttggccag tgccaaggag gagaacgtcg agattcacca gaccttggac cagaccctgc
901tggaactcaa caacctgtgc ccaactttct tgtacaaagt ggttggtaag cctatcccta
961accctctcct cggtctcgat tctacgtagt aatgagctag cgctaaccgg tggcgcgtta
1021agtcgacaat caacctctgg atta

Download FASTA (ORF) (Full)

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