Transcript: Human NM_001301226.2

Homo sapiens tropomyosin 2 (TPM2), transcript variant Tpm2.3, mRNA.

Source:
NCBI, updated 2019-08-08
Taxon:
Homo sapiens (human)
Gene:
TPM2 (7169)
Length:
1036
CDS:
109..963

Additional Resources:

NCBI RefSeq record:
NM_001301226.2
NBCI Gene record:
TPM2 (7169)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001301226.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000108661 GCGGACAAGTATTCCACCAAA pLKO.1 739 CDS 100% 4.950 6.930 N Tpm2 n/a
2 TRCN0000317358 GCGGACAAGTATTCCACCAAA pLKO_005 739 CDS 100% 4.950 6.930 N Tpm2 n/a
3 TRCN0000072416 GCCGAAGCCGACAAGAAGCAA pLKO.1 181 CDS 100% 1.000 1.400 N TPM2 n/a
4 TRCN0000072413 CGCTGAGGATTCAGACCGCAA pLKO.1 570 CDS 100% 0.720 1.008 N TPM2 n/a
5 TRCN0000375170 TTGTTACCAACAACTTGAAAT pLKO_005 704 CDS 100% 13.200 9.240 N Tpm2 n/a
6 TRCN0000436826 GGAGGAGAACGTCGAGATTCA pLKO_005 900 CDS 100% 4.950 3.465 N TPM2 n/a
7 TRCN0000072417 CGAGAGAGGAATGAAGGTCAT pLKO.1 477 CDS 100% 4.050 2.835 N TPM2 n/a
8 TRCN0000435866 GATCAAACTGTTGGAGGAGAA pLKO_005 780 CDS 100% 4.050 2.835 N TPM2 n/a
9 TRCN0000072415 GTCTGTGGCAAAGTTGGAGAA pLKO.1 840 CDS 100% 4.050 2.835 N TPM2 n/a
10 TRCN0000072414 GTATTCTGAATCCGTGAAGGA pLKO.1 285 CDS 100% 2.640 1.848 N TPM2 n/a
11 TRCN0000432695 GAAACTGGAGCAGGCCGAGAA pLKO_005 315 CDS 100% 1.350 0.945 N TPM2 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001301226.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_01702 pDONR223 100% 94.7% 94.7% None (many diffs) n/a
2 ccsbBroad304_01702 pLX_304 0% 94.7% 94.7% V5 (many diffs) n/a
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