Construct: ORF ccsbBroad304_01767

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF008721.1_s304c1, BRDN0000407690
Derived from:
ccsbBroadEn_01767
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
VDR (7421)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_01767
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 7421 VDR vitamin D receptor NM_000376.3 100% 100%
2 human 7421 VDR vitamin D receptor NM_001017535.1 100% 100%
3 human 7421 VDR vitamin D receptor XM_006719587.3 100% 100%
4 human 7421 VDR vitamin D receptor XM_011538720.2 100% 100%
5 human 7421 VDR vitamin D receptor XM_024449178.1 94.8% 94.8% 1_69del
6 human 7421 VDR vitamin D receptor NM_001017536.2 89.5% 89.5% 1_150del
7 human 7421 VDR vitamin D receptor NM_001364085.1 86.4% 100% 1282_1482del
8 mouse 22337 Vdr vitamin D (1,25-dihydroxyvi... NM_009504.4 86.1% 88% (many diffs)
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Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1347
ORF length:
1281
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatgga ggcaatggcg gccagcactt ccctgcctga ccctggagac tttgaccgga
121acgtgccccg gatctgtggg gtgtgtggag accgagccac tggctttcac ttcaatgcta
181tgacctgtga aggctgcaaa ggcttcttca ggcgaagcat gaagcggaag gcactattca
241cctgcccctt caacggggac tgccgcatca ccaaggacaa ccgacgccac tgccaggcct
301gccggctcaa acgctgtgtg gacatcggca tgatgaagga gttcattctg acagatgagg
361aagtgcagag gaagcgggag atgatcctga agcggaagga ggaggaggcc ttgaaggaca
421gtctgcggcc caagctgtct gaggagcagc agcgcatcat tgccatactg ctggacgccc
481accataagac ctacgacccc acctactccg acttctgcca gttccggcct ccagttcgtg
541tgaatgatgg tggagggagc catccttcca ggcccaactc cagacacact cccagcttct
601ctggggactc ctcctcctcc tgctcagatc actgtatcac ctcttcagac atgatggact
661cgtccagctt ctccaatctg gatctgagtg aagaagattc agatgaccct tctgtgaccc
721tagagctgtc ccagctctcc atgctgcccc acctggctga cctggtcagt tacagcatcc
781aaaaggtcat tggctttgct aagatgatac caggattcag agacctcacc tctgaggacc
841agatcgtact gctgaagtca agtgccattg aggtcatcat gttgcgctcc aatgagtcct
901tcaccatgga cgacatgtcc tggacctgtg gcaaccaaga ctacaagtac cgcgtcagtg
961acgtgaccaa agccggacac agcctggagc tgattgagcc cctcatcaag ttccaggtgg
1021gactgaagaa gctgaacttg catgaggagg agcatgtcct gctcatggcc atctgcatcg
1081tctccccaga tcgtcctggg gtgcaggacg ccgcgctgat tgaggccatc caggaccgcc
1141tgtccaacac actgcagacg tacatccgct gccgccaccc gcccccgggc agccacctgc
1201tctatgccaa gatgatccag aagctagccg acctgcgcag cctcaatgag gagcactcca
1261agcagtaccg ctgcctctcc ttccagcctg agtgcagcat gaagctaacg ccccttgtgc
1321tcgaagtgtt tggcaatgag atctcctgcc caactttctt gtacaaagtg gttggtaagc
1381ctatccctaa ccctctcctc ggtctcgatt ctacgtagta atgagctagc gctaaccggt
1441ggcgcgttaa gtcgacaatc aacctctgga tta

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