Transcript: Human NM_001364085.1

Homo sapiens vitamin D receptor (VDR), transcript variant 1, mRNA.

Source:
NCBI, updated 2019-09-03
Taxon:
Homo sapiens (human)
Gene:
VDR (7421)
Length:
4669
CDS:
161..1645

Additional Resources:

NCBI RefSeq record:
NM_001364085.1
NBCI Gene record:
VDR (7421)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001364085.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000276543 CTCCTGCCTACTCACGATAAA pLKO_005 1878 3UTR 100% 13.200 18.480 N VDR n/a
2 TRCN0000019504 CGAAGTGTTTGGCAATGAGAT pLKO.1 1417 CDS 100% 4.950 6.930 N VDR n/a
3 TRCN0000019505 GTCATCATGTTGCGCTCCAAT pLKO.1 968 CDS 100% 4.950 6.930 N VDR n/a
4 TRCN0000019508 CGCGTCAGTGACGTGACCAAA pLKO.1 1046 CDS 100% 1.650 2.310 N VDR n/a
5 TRCN0000276541 TCCTGCTCAGATCACTGTATC pLKO_005 713 CDS 100% 10.800 8.640 N VDR n/a
6 TRCN0000277001 ATGAAGCGGAAGGCACTATTC pLKO_005 314 CDS 100% 10.800 7.560 N VDR n/a
7 TRCN0000276544 TTGGCTTTGCTAAGATGATAC pLKO_005 885 CDS 100% 10.800 7.560 N VDR n/a
8 TRCN0000019506 CCTCCAGTTCGTGTGAATGAT pLKO.1 623 CDS 100% 5.625 3.938 N VDR n/a
9 TRCN0000276542 CCTCCAGTTCGTGTGAATGAT pLKO_005 623 CDS 100% 5.625 3.938 N VDR n/a
10 TRCN0000019507 CCCTGGAGACTTTGACCGGAA pLKO.1 196 CDS 100% 0.720 0.504 N VDR n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001364085.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_01767 pDONR223 100% 86.4% 100% None 1282_1482del n/a
2 ccsbBroad304_01767 pLX_304 0% 86.4% 100% V5 1282_1482del n/a
3 TRCN0000473705 GTTTCTTCAAGCTGCGCTTCCAAT pLX_317 39.3% 86.4% 100% V5 1282_1482del n/a
4 TRCN0000489764 CTGGAGACAAGTGCGACAGCCATA pLX_317 27.1% 86.4% 99.7% V5 1282_1482delinsG n/a
5 TRCN0000489501 GGAGTCCCATGAATCCTTAGGTGA pLX_317 28.6% 85.8% 99% V5 1_9delATGGAGGCA;1282_1482delinsG n/a
6 TRCN0000488926 TTATCGAGACCACCCAACCGAGGC pLX_317 27.5% 85.8% 99.2% V5 (not translated due to prior stop codon) 1_9delATGGAGGCA;1282_1482del n/a
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