Construct: ORF ccsbBroad304_02178
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF003193.1_s304c1, BRDN0000398690
- Derived from:
- ccsbBroadEn_02178
- DNA Barcode:
- None
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- XAGE1D (9503)
Vector Information:
- Vector Backbone:
- pLX_304
- Pol II Cassette 1:
- PGK-BlastR
- Pol II Cassette 2:
- CMV-ccsbBroad304_02178
- Selection Marker:
- BlastR
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 653220 | XAGE1A | X antigen family member 1A | NM_001097594.3 | 100% | 100% | |
| 2 | human | 653067 | XAGE1B | X antigen family member 1B | NM_001097604.2 | 100% | 100% | |
| 3 | human | 653220 | XAGE1A | X antigen family member 1A | NM_001097596.3 | 73.7% | 31.1% | 97_112del;207_208ins52 |
| 4 | human | 653067 | XAGE1B | X antigen family member 1B | NM_001097605.2 | 73.7% | 31.1% | 97_112del;207_208ins52 |
| 5 | human | 653067 | XAGE1B | X antigen family member 1B | XM_017029747.1 | 55.4% | 55.4% | 1_195del |
| 6 | human | 653220 | XAGE1A | X antigen family member 1A | XM_017029749.1 | 55.4% | 55.4% | 1_195del |
| 7 | human | 653067 | XAGE1B | X antigen family member 1B | XM_017029746.1 | 38.5% | 18% | 1_237del;334_349del;444_445ins52 |
| 8 | human | 653220 | XAGE1A | X antigen family member 1A | XM_017029748.1 | 38.5% | 18% | 1_237del;334_349del;444_445ins52 |
| 9 | human | 653220 | XAGE1A | X antigen family member 1A | NR_033254.1 | 33.1% | 1_399del;643_733del | |
| 10 | human | 653067 | XAGE1B | X antigen family member 1B | NR_033257.1 | 33.1% | 1_399del;643_733del |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 309
- ORF length:
- 243
- Sequence:
-
1 ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag 61 ttggcatgga gagccccaaa aagaagaacc agcagctgaa agtcgggatc ctacacctgg 121 gcagcagaca gaagaagatc aggatacagc tgagatccca gtgcgcgaca tggaaggtga 181 tctgcaagag ctgcatcagt caaacaccgg ggataaatct ggatttgggt tccggcgtca 241 aggtgaagat aatacctaaa gaggaacact gtaaaatgcc agaagcaggt gaagagcaac 301 cacaagttta cccaactttc ttgtacaaag tggttggtaa gcctatccct aaccctctcc 361 tcggtctcga ttctacgtag taatgagcta gcgctaaccg gtggcgcgtt aagtcgacaa 421 tcaacctctg gatta