Construct: ORF ccsbBroad304_02233

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF016122.1_s304c1, BRDN0000462300
Derived from:
ccsbBroadEn_02233
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
IFT140 (9742)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_02233
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 9742 IFT140 intraflagellar transport 140 NM_014714.4 100% 100%
2 human 9742 IFT140 intraflagellar transport 140 XM_006720990.3 100% 100%
3 human 9742 IFT140 intraflagellar transport 140 XM_006720991.3 100% 100%
4 human 9742 IFT140 intraflagellar transport 140 XM_017023910.1 100% 100%
5 human 9742 IFT140 intraflagellar transport 140 XM_011522766.3 94.3% 94.3% 1522_1523ins246
6 human 9742 IFT140 intraflagellar transport 140 XM_011522767.2 77.5% 76.7% (many diffs)
7 human 9742 IFT140 intraflagellar transport 140 XM_017023911.1 58.6% 58.6% 0_1ins1815
8 human 9742 IFT140 intraflagellar transport 140 XM_011522769.3 55.4% 54.9% (many diffs)
9 human 9742 IFT140 intraflagellar transport 140 XM_005255725.5 55% 54.7% (many diffs)
10 human 9742 IFT140 intraflagellar transport 140 XM_011522771.3 54.9% 54.7% (many diffs)
11 human 9742 IFT140 intraflagellar transport 140 XM_011522772.3 54.8% 54.7% (many diffs)
12 human 9742 IFT140 intraflagellar transport 140 XM_005255726.4 54.7% 54.6% 2398_2399insGT;2402C>G;2403_2404ins1981
13 human 9742 IFT140 intraflagellar transport 140 XM_006720992.3 45.9% 45.5% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
4452
ORF length:
4386
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaagaag
61ttggcatggc cctctattat gaccaccaga tagaagcccc ggatgcagca gggtcaccct
121catttatcag ctggcaccct gtccatccat tcttggcagt tgcttacatc agcacaacct
181caacaggcag cgtggatatt tacctggagc aaggggagtg cgtgccagat acacacgtcg
241agaggccgtt ccgggttgct tccctgtgct ggcacccgac gcggctggtg ctggctgtgg
301gctgggagac tggagaagtg acggtgttta acaagcagga caaggagcag cacacgatgc
361ccctgacaca cacagccgac atcaccgtgc tccgttggag ccccagtgga aactgcctgc
421tgtctgggga caggcttggt gtcttgctct tgtggaggtt ggaccaaagg ggccgagtgc
481aagggacgcc tctgctgaaa cacgagtatg ggaaacacct cacgcactgc atcttccggc
541tcccccctcc tggcgaggac ctggttcagt tggcaaaggc agctgtgagc ggtgatgaga
601aagccctgga catgtttaac tggaagaaga gcagttctgg aagtttgctg aagatggggt
661ctcacgaggg gctgttgttc tttgtcagtc tgatggacgg gacagtgcac tatgtggatg
721agaagggcaa gaccactcag gtggtgtccg cagacagcac gattcagatg ctgttctaca
781tggagaagag ggaggcactg gtggtggtca cagagaacct ccggctgtcc ctgtacacgg
841tgcctcctga gggcaaagca gaagaagtga tgaaggtcaa gctgagcggg aaaaccggcc
901gccgggcaga catcgctttg attgaaggca gccttctcgt gatggccgtc ggggaggctg
961ccctcagatt ctgggacata gaacgaggag agaattatat actgagtcca gatgagaagt
1021ttggctttga gaaaggagag aatatgaact gtgtgtgtta ctgtaaagtc aaaggtcttc
1081tggccgctgg taccgacaga gggcgagtag ccatgtggag gaaagtacca gacttcctgg
1141gcagccccgg ggcagagggc aaggacaggt gggcccttca gacccctacc gagctccaag
1201gaaacatcac gcaaatccag tggggttcca ggaagaacct gctggcagtg aacagcgtca
1261tctccgtggc catcctcagc gagcgggcca tgtcgtcaca cttccaccag caagtggccg
1321ccatgcaggt ctccccgagt ctgctgaatg tgtgcttcct gtccacgggg gtcgcacaca
1381gcctgcgcac cgacatgcac atcagtggag tgtttgccac caaggatgct gtcgcagtct
1441ggaacggaag gcaggtggcg atcttcgagc tttctggagc cgcgatacgg agtgcaggga
1501ccttcttgtg tgagacgcct gtgttagcaa tgcatgaaga aaacgtttac acggtggagt
1561caaaccgagt tcaagttcga acctggcagg ggactgtcaa acaactcctc cttttctcgg
1621agactgaggg gaatccctgc ttcttggaca tctgtgggaa tttcctggtt gtagggacag
1681acttggctca ctttaaaagc tttgatcttt cccgaagaga ggccaaagca cactgtagct
1741gcaggagcct ggcggagctg gtccctgggg tggggggcat cgcttctctg cggtgcagca
1801gcagcgggag caccatcagc atcctcccca gcaaggctga caacagccct gattccaaaa
1861tctgcttcta cgatgttgaa atggacacag tgaccgtctt tgacttcaag actggacaaa
1921ttgatcggag agagacgctg tcctttaatg agcaagagac taataagagc cacctctttg
1981tggatgaggg actgaaaaat tatgttcccg tgaaccactt ctgggaccag agtgagcccc
2041ggctgtttgt atgcgaagcc gtgcaggaga cgccgcgctc ccagcctcag tctgcaaacg
2101ggcagcccca agatgggcgc gctggccctg cggcagatgt tttgatcctg tccttcttca
2161tttccgaaga gcacggcttc ctgcttcatg agagcttccc ccggcctgcc acctcccaca
2221gtctcctggg gatggaagtg ccttattact acttcacaag aaagcccgaa gaagcagaca
2281gagaagacga ggtggagcct gggtgccacc acatccctca gatggtgtcc aggagacccc
2341tgcgagactt tgtggggctg gaggactgcg acaaggccac ccgggacgcc atgctccact
2401tcagcttctt tgtcaccata ggagacatgg acgaagcctt caaatccatc aagctcatca
2461aaagtgaggc cgtctgggag aacatggcgc gcatgtgcgt gaagacccag cggctggacg
2521tggccaaggt gtgcctgggg aacatgggcc atgcccgcgg ggcccgagcg ctgcgtgagg
2581cggagcagga gccggagcta gaggcccgcg tggccgtgct ggccacgcag ctgggcatgc
2641tggaggacgc cgagcagctg tacaggaagt gcaagcgcca cgacctcctg aacaagttct
2701accaggctgc gggccggtgg caggaggccc tccaggtagc cgagcaccac gatcgcgtgc
2761acctgcgcag cacctaccac cgctatgccg ggcacctgga ggccagcgcc gactgcagcc
2821gggccctcag ttactacgag aagtcggaca cgcaccgctt cgaggtgccc aggatgctgt
2881cggaggacct gccgtccctg gagctctacg tgaataaaat gaaggataag accctgtggc
2941ggtggtgggc gcagtacctg gagagccagg gcgagatgga cgccgcgctg cactactacg
3001agctggcccg ggaccacttc tccctggtcc gcatccactg cttccagggc aatgtccaga
3061aggctgcgca aatagccaac gagacaggaa acctggcggc ctcctaccac ctcgcccgcc
3121agtacgagag ccaggaggag gtcgggcagg cggtgcactt ctacacccgg gcacaggcct
3181tcaagaatgc catccgcctg tgcaaggaga acggcctgga cgaccagctc atgaacttgg
3241ccctgctgag ctcccccgag gacatgatcg aggcggcccg atactacgag gagaagggcg
3301tgcagatgga cagggcggtc atgctgtacc acaaggctgg ccacttctcc aaggccctgg
3361agctggcctt tgccacccag cagtttgtgg ccctacagct catagcagag gacctggatg
3421agacgtcaga ccctgcgctc ctggcccgct gctccgactt cttcatcgag cacagtcagt
3481acgagagggc ggtagagctg ctgctggctg ccaggaagta tcaggaagcc ctgcagctgt
3541gcctggggca gaacatgagc atcaccgagg agatggcgga aaagatgacc gtggccaagg
3601actcctcgga cctgcctgag gagtcgcggc gggagctgct ggagcagata gcagactgct
3661gcatgcgcca gggcagctac cacctggcca ccaagaagta cacgcaggcc ggcaacaagc
3721tgaaggccat gagggcgctg ctcaaatccg gagacacgga gaaaatcacg ttcttcgcga
3781gcgtgtccag gcagaaggaa atctacatca tggctgctaa ctacctgcag tccctggact
3841ggcggaagga gccggagatc atgaagaaca tcatcggctt ctacaccaag gggcgggccc
3901tggacctcct ggctggcttt tatgacgctt gtgcccaggt ggagattgat gaataccaga
3961actacgacaa agcccacggg gcgctgaccg aggcctacaa gtgcctggcc aaggccaagg
4021ccaagagccc cctggaccag gagaccaggc tggcgcagct gcagagcagg atggcactgg
4081tgaagaggtt catccaggcc cgcaggacgt acacagagga ccccaaggag tccatcaagc
4141agtgtgagct gctcctggag gaaccagacc tggacagcac catccgcatc ggggacgtct
4201atggcttcct ggtggagcac tacgtgcgga aggaggaata ccagacggcc tacagattcc
4261tggaggagat gcggcggcgg cttcccttgg ccaacatgtc ctactacgtg agcccgcagg
4321ccgtggacgc cgtgcaccgg gggctgggtc tcccactgcc acgcaccgtc cccgagcagg
4381tccgccacaa cagcatggag gacgccaggg agctggacga ggaggtggtg gaagaggcag
4441atgacgaccc ctgcccaact ttcttgtaca aagtggttgg taagcctatc cctaaccctc
4501tcctcggtct cgattctacg tagtaatgag ctagcgctaa ccggtggcgc gttaagtcga
4561caatcaacct ctggatta

Download FASTA (ORF) (Full)