Construct: ORF ccsbBroad304_02271

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF001686.1_s304c1, BRDN0000403416
Derived from:
ccsbBroadEn_02271
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
LPGAT1 (9926)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_02271
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 9926 LPGAT1 lysophosphatidylglycerol ac... NM_001320808.2 100% 100%
2 human 9926 LPGAT1 lysophosphatidylglycerol ac... NM_014873.3 100% 100%
3 human 9926 LPGAT1 lysophosphatidylglycerol ac... XM_011510228.3 100% 100%
4 human 9926 LPGAT1 lysophosphatidylglycerol ac... XM_011510229.3 100% 100%
5 human 9926 LPGAT1 lysophosphatidylglycerol ac... XM_024451298.1 100% 100%
6 human 9926 LPGAT1 lysophosphatidylglycerol ac... XM_005273362.3 91.8% 91.8% 1_99del
7 human 9926 LPGAT1 lysophosphatidylglycerol ac... XM_017003004.1 83.1% 79.8% (many diffs)
8 mouse 226856 Lpgat1 lysophosphatidylglycerol ac... NM_172266.3 89.5% 90% (many diffs)
9 mouse 226856 Lpgat1 lysophosphatidylglycerol ac... XM_006497155.3 89.5% 90% (many diffs)
10 mouse 226856 Lpgat1 lysophosphatidylglycerol ac... XM_006497156.3 89.5% 90% (many diffs)
11 mouse 226856 Lpgat1 lysophosphatidylglycerol ac... NM_001134829.1 81% 81.4% (many diffs)
12 mouse 226856 Lpgat1 lysophosphatidylglycerol ac... XM_006497153.3 81% 81.4% (many diffs)
13 mouse 226856 Lpgat1 lysophosphatidylglycerol ac... XM_017320202.1 72.2% 71% (many diffs)
14 mouse 226856 Lpgat1 lysophosphatidylglycerol ac... XM_006497157.3 70.5% 70.5% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1176
ORF length:
1110
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatggc tataactttg gaagaagctc cgtggctggg ctggctcttg gtgaaagcac
121tgatgaggtt tgccttcatg gtcgtcaaca acctggttgc tattccatcc tacatctgct
181atgtaattat acttcagccc cttcgagtgc tggacagtaa gcggttctgg tatatcgaag
241gaatcatgta taaatggctt ttaggaatgg tagcttcctg gggatggtat gctggatata
301cagtgatgga atggggagaa gatattaaag cagtttcaaa agatgaagca gtgatgttgg
361tgaatcatca ggcaacagga gatgtgtgca cactgatgat gtgcctccag gacaaaggac
421tggttgttgc tcagatgatg tggttgatgg atcatatttt taagtacaca aactttggaa
481ttgtttctct agttcatgga gacttcttta taagacaggg aagatcttat cgtgaccaac
541agctgctgct tctcaagaag cacttagaaa ataattacag gagcagagat cgaaaatgga
601ttgttttgtt tccagaaggg ggcttcctca ggaagaggcg agaaacaagt caggcatttg
661ccaagaaaaa taacttgcca tttcttacaa atgttactct gccaaggtct ggggcaacaa
721aaattatttt gaatgcactt gtagcacaac agaaaaatgg aagtccagca ggaggagatg
781ctaaagaatt agacagcaaa tcaaaaggcc tccagtggat aatagataca acgatagctt
841atcccaaagc tgaacctata gatattcaaa cctggatcct tggatacagg aaaccaacag
901tcacacatgt acattacagg atctttccaa ttaaagatgt acccctggag actgatgacc
961ttaccacttg gctctatcag cggtttgttg aaaaagaaga cctcttatca catttttatg
1021aaacaggagc ttttccacct tccaagggcc ataaggaagc tgtttccagg gagatgaccc
1081tcagcaactt gtggatattt ctcatacagt cttttgcatt tttgtcaggc tatatgtggt
1141acaacatcat tcagtatttt taccattgcc tgttttaccc aactttcttg tacaaagtgg
1201ttggtaagcc tatccctaac cctctcctcg gtctcgattc tacgtagtaa tgagctagcg
1261ctaaccggtg gcgcgttaag tcgacaatca acctctggat ta

Download FASTA (ORF) (Full)