Construct: ORF ccsbBroad304_02297

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF012909.1_s304c1, BRDN0000409243
Derived from:
ccsbBroadEn_02297
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
DNAJB6 (10049)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_02297
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 10049 DNAJB6 DnaJ heat shock protein fam... NM_058246.4 100% 100%
2 human 10049 DNAJB6 DnaJ heat shock protein fam... XM_005249515.3 93.3% 91% (many diffs)
3 human 10049 DNAJB6 DnaJ heat shock protein fam... XM_005249516.2 93.3% 91% (many diffs)
4 human 10049 DNAJB6 DnaJ heat shock protein fam... XM_011515704.1 93.3% 91% (many diffs)
5 human 10049 DNAJB6 DnaJ heat shock protein fam... XM_006715823.2 78.8% 78.8% 690_691ins207
6 human 10049 DNAJB6 DnaJ heat shock protein fam... NM_005494.3 72.1% 71.7% (many diffs)
7 human 10049 DNAJB6 DnaJ heat shock protein fam... NM_001363676.1 64.7% 64.7% 344_345ins345
8 mouse 23950 Dnajb6 DnaJ heat shock protein fam... NM_001037940.4 76.7% 75.6% (many diffs)
9 mouse 23950 Dnajb6 DnaJ heat shock protein fam... XM_006535707.3 72.1% 68.9% (many diffs)
10 mouse 23950 Dnajb6 DnaJ heat shock protein fam... XM_006535708.3 71.5% 74.3% (many diffs)
11 mouse 23950 Dnajb6 DnaJ heat shock protein fam... NM_011847.4 65.5% 68.1% (many diffs)
12 mouse 23950 Dnajb6 DnaJ heat shock protein fam... NM_001127367.1 65.2% 67.8% (many diffs)
13 mouse 546133 Gm5917 predicted gene 5917 XM_011242843.2 64.5% 66.4% (many diffs)
14 mouse 102633596 LOC102633596 dnaJ homolog subfamily B me... XR_391160.2 17% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1044
ORF length:
978
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatggt ggattactat gaagttctag gcgtgcagag acatgcctca cccgaggata
121ttaaaaaggc atatcggaaa ctggcactga agtggcatcc agataaaaat cctgagaata
181aagaagaagc agagagaaaa ttcaagcaag tagcggaggc atatgaagtg ctgtcggatg
241ctaagaaacg ggacatctat gacaaatatg gcaaagaagg attaaatggt ggaggaggag
301gtggaagtca ttttgacagt ccatttgaat ttggcttcac attccgtaac ccagatgatg
361tcttcaggga attttttggt ggaagggacc cattttcatt tgacttcttt gaagaccctt
421ttgaggactt ctttgggaat cgaaggggtc cccgaggaag cagaagccga gggacggggt
481cgtttttctc tgcgttcagt ggatttccgt cttttggaag tggattttct tcttttgata
541caggatttac ttcatttggg tcactaggtc acgggggcct cacttcattc tcttccacgt
601catttggtgg tagtggcatg ggcaacttca aatcgatatc aacttcaact aaaatggtta
661atggcagaaa aatcactaca aagagaattg tcgagaacgg tcaagaaaga gtagaagttg
721aagaagatgg ccagttaaag tccttaacaa taaatggtgt ggccgacgac gatgccctcg
781ctgaggagcg catgcggaga ggccagaacg ccctgccagc ccagcctgcc ggcctccgcc
841cgccgaagcc gccccggcct gcctcgctgc tgagacacgc gcctcactgt ctctctgagg
901aggagggcga gcaggaccga cctcgggcac ccgggccctg ggaccccctc gcgtccgcag
961caggattgaa agaaggtggc aagaggaaga agcagaagca gagagaggag tcgaagaaga
1021agaagtcgac caaaggcaat cactacccaa ctttcttgta caaagtggtt ggtaagccta
1081tccctaaccc tctcctcggt ctcgattcta cgtagtaatg agctagcgct aaccggtggc
1141gcgttaagtc gacaatcaac ctctggatta

Download FASTA (ORF) (Full)