Construct: ORF ccsbBroad304_02349
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF016351.1_s304c1, BRDN0000405276
- Derived from:
- ccsbBroadEn_02349
- DNA Barcode:
- None
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- MPHOSPH9 (10198)
Vector Information:
- Vector Backbone:
- pLX_304
- Pol II Cassette 1:
- PGK-BlastR
- Pol II Cassette 2:
- CMV-ccsbBroad304_02349
- Selection Marker:
- BlastR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 10198 | MPHOSPH9 | M-phase phosphoprotein 9 | XM_017018679.1 | 100% | 100% | |
| 2 | human | 10198 | MPHOSPH9 | M-phase phosphoprotein 9 | XM_017018680.1 | 100% | 100% | |
| 3 | human | 10198 | MPHOSPH9 | M-phase phosphoprotein 9 | XM_017018678.1 | 88.6% | 88.6% | 1_255del;991_992ins126 |
| 4 | human | 10198 | MPHOSPH9 | M-phase phosphoprotein 9 | NM_022782.4 | 87.1% | 87.1% | 1_456del |
| 5 | human | 10198 | MPHOSPH9 | M-phase phosphoprotein 9 | XM_017018673.1 | 87.1% | 87.1% | 1_456del |
| 6 | human | 10198 | MPHOSPH9 | M-phase phosphoprotein 9 | XM_011537740.2 | 84.3% | 84.3% | 1_456del;3451_3452delCT;3453_3454ins98 |
| 7 | human | 10198 | MPHOSPH9 | M-phase phosphoprotein 9 | XM_011537741.2 | 84.3% | 84.3% | 1_456del;3451_3452delCT;3453_3454ins98 |
| 8 | human | 10198 | MPHOSPH9 | M-phase phosphoprotein 9 | XM_017018674.1 | 84.2% | 84.1% | 1_456del;2354_2355ins102 |
| 9 | human | 10198 | MPHOSPH9 | M-phase phosphoprotein 9 | XM_017018675.1 | 83.6% | 83.6% | 1_456del;1192_1193ins126 |
| 10 | human | 10198 | MPHOSPH9 | M-phase phosphoprotein 9 | XM_017018676.1 | 82.7% | 82.7% | 1_456del;1781_1782ins156 |
| 11 | human | 10198 | MPHOSPH9 | M-phase phosphoprotein 9 | XM_017018677.1 | 80.8% | 80.7% | 1_456del;2908_2909ins225 |
| 12 | human | 10198 | MPHOSPH9 | M-phase phosphoprotein 9 | XM_017018681.1 | 78.5% | 78.5% | 0_1ins663 |
| 13 | human | 10198 | MPHOSPH9 | M-phase phosphoprotein 9 | XM_024448794.1 | 78.5% | 78.5% | 0_1ins663 |
| 14 | human | 10198 | MPHOSPH9 | M-phase phosphoprotein 9 | XR_001748540.1 | 73.2% | 1_682del;3254_3255ins26;3750_4163del | |
| 15 | human | 10198 | MPHOSPH9 | M-phase phosphoprotein 9 | XR_001748542.1 | 71.3% | 1_682del;3254_3255ins104;3672_4085del | |
| 16 | human | 10198 | MPHOSPH9 | M-phase phosphoprotein 9 | XR_001748543.1 | 68.3% | (many diffs) | |
| 17 | human | 10198 | MPHOSPH9 | M-phase phosphoprotein 9 | XR_001748544.1 | 67.1% | (many diffs) | |
| 18 | human | 10198 | MPHOSPH9 | M-phase phosphoprotein 9 | XR_001748541.1 | 52.4% | (many diffs) | |
| 19 | human | 10198 | MPHOSPH9 | M-phase phosphoprotein 9 | XR_001748539.1 | 43.9% | 1_710del;3804_7032del | |
| 20 | human | 10198 | MPHOSPH9 | M-phase phosphoprotein 9 | NR_103517.2 | 42.6% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 3162
- ORF length:
- 3093
- Sequence:
-
1 ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag 61 ttggcaaaat gggttttttt tctctaagca gtgagagaaa tgaatctgtt atccattatc 121 ctgaatccac agaacctgaa atacagcaag aaatgtccac gtcacaacca gactgcaatg 181 tggatagttg ctcagtaagc agtggatatg gcaccttttg tatctcagaa ttaaatctgt 241 acaaatctaa agaccctaag gagttcatgg agcacataga tgttcccaaa ggacagtatg 301 tagcacctgc ggtgccggct gagtcacttg tagatggtgt gaaaaatgag aatttttata 361 tacagactcc tgaagagtgt catgtgtctt taaaggaaga tgtatccatt tctcctggtg 421 aatttgaaca taattttctt ggtgaaaata aggtttctga agtatacagt gggaaaacaa 481 atagtaatgc tataacatca tgggcacaaa aactgaagca gaaccaacca aagagagcac 541 atgtagaaga tggaggttca agatctaaac aaggaaatga gcaaagtaag aagacaccaa 601 ttgagaaatc tgattttgct gctgctacac atcctcgtgc tttttacctc agtaaaccag 661 atgaaactcc aaatgcttgg atgtctgatt caggaacagg attgacttac tggaaactag 721 aggaaaagga tatgcaccac tctttgcctg aaactttaga gaagacgttc atatcattgt 781 cttccacaga tgtgtcacca aaccagtcta atactagtaa tgagatgaag ctaccgtcac 841 tgaaggatat ttattataaa aaacaaaggg aaaacaagca gttacctgag aggaatctca 901 cttctgcttc caacccaaat catccaccag aggtcctgac tctagatcct acgttacaca 961 tgaagccaaa gcagcagatt tcagggattc aacctcacgg ccttccgaat gcccttgatg 1021 acagaatatc cttttccccg gactctgttc tagagcctag tatgtctagt ccctctgaca 1081 tagactcatt ttcacaagca agtaatgtca cttctcagtt acctggattt ccaaaatatc 1141 cctcacacac aaaagcttct ccggtggact cttggaaaaa tcagacattc caaaacgaaa 1201 gtaggaccag ttccacgttt ccgtcagtat ataccattac tagtaatgat atctcggtca 1261 acactgtaga tgaagaaaac actgtcatgg ttgcttcggc ctcagtcagt cagtcccagc 1321 ttccaggtac agccaacagt gtcccagaat gcatttcatt gacttccttg gaagatcctg 1381 tgatattgtc taagattagg cagaatctga aggaaaagca tgctcgacac atagcagatc 1441 ttcgagctta ttatgaatca gaaataaata gtttgaaaca gaagctggag gcaaaagaaa 1501 tctctggagt tgaagattgg aagataacca atcaaattct tgtagacaga tgtggccaat 1561 tagatagtgc tttgcatgaa gctactagtc gcgtgagaac acttgaaaat aagaataact 1621 tactggaaat tgaagtgaat gatttgagag aacgcttcag tgcagccagc agtgcttcca 1681 aaattttgca ggaacgaatt gaagaaatga gaacaagcag taaagaaaaa gacaatacca 1741 tcattcgact aaaatctaga ctgcaagatt tagaagaagc atttgagaat gcttacaaac 1801 tctcagatga taaagaagct caactaaaac aagagaacaa aatgtttcaa gatcttttag 1861 gagagtatga gtcccttgga aaagaacaca ggagagtaaa ggatgcatta aatacaactg 1921 agaacaaatt gcttgatgca tatactcaga tttctgattt gaaaagaatg atttcaaaac 1981 ttgaagctca ggtcaagcaa gtagaacatg aaaatatgtt aagccttcgt cataattcta 2041 gaattcacgt gagaccctcg cgtgccaaca cactagcaac ttcagacgtc agcaggcgga 2101 aatggctgat tccaggtgca gagtattcca tctttactgg ccagcctctg gacacccagg 2161 acagtaacgt ggataaccag ctggaggaaa cctgtagcct agggcaccgt tcacctctgg 2221 aaaaggattc ttcacctgga agttcatcaa caagcttgtt gataaaaaag caaagagaga 2281 cttcagacac gccgatcatg agagctttaa aagaacttga tgagggaaaa atatttaaaa 2341 attgggggac acagacagag aaagaggaca cctcaaatat aaatcctcgg caaactgaaa 2401 cttcagttaa tgcaagtcgt tctccagaaa agtgtgccca acagagacaa aagagactta 2461 attcggcctc acagagatca tcatctttac caccttcaaa tcgtaaatca agtactccaa 2521 caaaaagaga gattatgcta acaccagtga ctgtggctta tagtccaaag cgatccccta 2581 aagaaaactt gtccccagga tttagtcatc tgcttagcaa aaatgagagc agtccaattc 2641 gatttgatat acttttggat gatttagata ctgttcctgt gtctacatta caacgtacca 2701 atccaagaaa gcaactccag tttcttcctc tagatgactc ggaagaaaaa acttattctg 2761 agaaagccac cgataaccat gttaatcata gctcttgccc tgaaccggtg ccaaatggag 2821 tgaagaaagt atctgtgaga acagcctggg agaagaataa atcagttagc tacgaacagt 2881 gtaagccggt ttcagtcact ccacagggga atgattttga atatacagca aaaattcgga 2941 ccctagctga aacagaacga ttttttgatg aacttacaaa agaaaaggac cagattgagg 3001 cagcactaag caggatgcct tctcctggag gacgaatcac tttacagaca agattaaatc 3061 aggaagcctt ggaagatcgt ttggaaagga ttaatcgaga actgggttca gttcgcatga 3121 cgctaaagaa attccatgtt ttgcgcacct ctgcaaatct tttgccaact ttcttgtaca 3181 aagtggttgg taagcctatc cctaaccctc tcctcggtct cgattctacg tagtaatgag 3241 ctagcgctaa ccggtggcgc gttaagtcga caatcaacct ctggatta