Construct: ORF ccsbBroad304_02395

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF002947.1_s304c1, BRDN0000460787
Derived from:
ccsbBroadEn_02395
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
VPS26C (10311)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_02395
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 10311 VPS26C VPS26 endosomal protein sor... NM_006052.2 100% 100%
2 human 10311 VPS26C VPS26 endosomal protein sor... NM_001331022.1 90.9% 90.9% 351_352ins81
3 human 10311 VPS26C VPS26 endosomal protein sor... NM_001331021.1 83.8% 83.8% 56_57ins144
4 human 10311 VPS26C VPS26 endosomal protein sor... NM_001331018.1 57.9% 57.9% 57_58ins375
5 mouse 13185 Dscr3 DSCR3 arrestin fold containing NM_007834.3 85.1% 91.5% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
960
ORF length:
891
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcaccat ggggaccgcc ctggacatca agattaaaag agcgaataaa gtttatcacg
121ccggggaagt gctctctggc gtggtggtca tatcgagtaa ggattcagtc caacaccagg
181gagtgtcttt gaccatggaa ggaactgtaa acctccagct cagtgccaaa agtgtgggtg
241tgtttgaagc tttttataat tctgttaagc ctatccagat tatcaacagc accatagaaa
301tggtgaagcc ggggaaattt cccagcggca aaacagaaat cccttttgaa tttcctctgc
361acttgaaggg taacaaagtt ctgtatgaga cgtatcatgg cgtgtttgtc aacattcagt
421atacactgcg ctgtgacatg aagcggtctc tgttggccaa ggacttgaca aagacctgtg
481aatttatcgt tcactccgct cctcagaagg ggaagtttac tcccagtccc gtggacttca
541cgattacacc tgaaacctta cagaacgtca aagagagagc tttgcttccc aaatttctcc
601ttcgaggaca tctcaactca acaaactgtg tcatcacgca gccactaacg ggagagctgg
661tggtggagag ctcggaagcc gccatcagaa gcgtggagct gcagctggtg cgcgtggaga
721cgtgcgggtg tgcagaaggc tatgcccgcg acgccacgga gattcagaac attcagatcg
781ccgacgggga tgtgtgcagg ggcctctctg tccccatcta catggtcttc cctaggctgt
841tcacctgccc tacactggag accaccaact tcaaagtgga atttgaggtt aacatcgtgg
901tgctgcttca ccctgaccac ctcatcacgg agaacttccc gctgaagctc tgcaggatat
961tgccaacttt cttgtacaaa gtggttggta agcctatccc taaccctctc ctcggtctcg
1021attctacgta gtaatgagct agcgctaacc ggtggcgcgt taagtcgaca atcaacctct
1081ggatta

Download FASTA (ORF) (Full)