Construct: ORF ccsbBroad304_02889

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF010172.1_s304c1, BRDN0000399999
Derived from:
ccsbBroadEn_02889
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
WWTR1 (25937)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_02889
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 25937 WWTR1 WW domain containing transc... NM_001168278.2 100% 100%
2 human 25937 WWTR1 WW domain containing transc... NM_001168280.3 100% 100%
3 human 25937 WWTR1 WW domain containing transc... NM_001348362.1 100% 100%
4 human 25937 WWTR1 WW domain containing transc... NM_015472.6 100% 100%
5 human 25937 WWTR1 WW domain containing transc... XM_017006122.1 100% 100%
6 mouse 97064 Wwtr1 WW domain containing transc... NM_133784.3 88.1% 91.2% (many diffs)
7 mouse 97064 Wwtr1 WW domain containing transc... NM_001168281.1 77.2% 79.8% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1266
ORF length:
1200
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatgaa tccggcctcg gcgccccctc cgctcccgcc gcctgggcag caagtgatcc
121acgtcacgca ggacctagac acagacctcg aagccctctt caactctgtc atgaatccga
181agcctagctc gtggcggaag aagatcctgc cggagtcttt ctttaaggag cctgattcgg
241gctcgcactc gcgccagtcc agcaccgact cgtcgggcgg ccacccgggg cctcgactgg
301ctgggggtgc ccagcatgtc cgctcgcact cgtcgcccgc gtccctgcag ctgggcaccg
361gcgcgggtgc tgcgggtagc cccgcgcagc agcacgcgca cctccgccag cagtcctacg
421acgtgaccga cgagctgcca ctgcccccgg gctgggagat gaccttcacg gccactggcc
481agaggtactt cctcaatcac atagaaaaaa tcaccacatg gcaagaccct aggaaggcga
541tgaatcagcc tctgaatcat atgaacctcc accctgccgt cagttccaca ccagtgcctc
601agaggtccat ggcagtatcc cagccaaatc tcgtgatgaa tcaccaacac cagcagcaga
661tggcccccag taccctgagc cagcagaacc accccactca gaacccaccc gcagggctca
721tgagtatgcc CAATGCGCTG ACCACTCAGC AGCAGCAGCA GCAGAAACTG CGGCTTCAGA
781GAATCCAGAT GGAGAGAGAA AGGATTCGAA TGCGCCAAGA GGAGCTCATG AGGCAGGAAG
841CTGCCCTCTG TCGACAGCTC CCCATGGAAG CTGAGACTCT TGCCCCAGTT CAGGCTGCTG
901TCAACCCACC CACGATGACC CCAGACATGA GATCCATCAC TAATAATAGC TCAGATCCTT
961TCCTCAATGG AGGGCCATAT CATTCGAGGG AGCAGAGCAC TGACAGTGGC CTGGGGTTAG
1021GGTGCTACAG TGTCCCCACA ACTCCGGAGG ACTTCCTCAG CAATGTGGAT GAGATGGATA
1081CAGGAGAAAA CGCAGGACAA ACACCCATGA ACATCAATCC CCAACAGACC CGTTTCCCTG
1141ATTTCCTTGA CTGTCTTCCA GGAACAAACG TTGACTTAGG AACTTTGGAA TCTGAAGACC
1201TGATCCCCCT CTTCAATGAT GTAGAGTCTG CTCTGAACAA AAGTGAGCCC TTTCTAACCT
1261GGCTGTACCC AACTTTCTTG TACaaagtgg ttggtaagcc tatccctaac cctctcctcg
1321gtctcgattc tacgtagtaa tgagctagcg ctaaccggtg gcgcgttaag tcgacaatca
1381acctctggat ta

Download FASTA (ORF) (Full)