Construct: ORF ccsbBroad304_03213

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF016474.1_s304c1, BRDN0000403381
Derived from:
ccsbBroadEn_03213
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
ZDHHC9 (51114)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_03213
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 51114 ZDHHC9 zinc finger DHHC-type conta... NM_001008222.3 100% 100%
2 human 51114 ZDHHC9 zinc finger DHHC-type conta... NM_016032.4 100% 100%
3 human 51114 ZDHHC9 zinc finger DHHC-type conta... XM_011531348.3 52.8% 45.2% (many diffs)
4 human 51114 ZDHHC9 zinc finger DHHC-type conta... XR_001755694.2 23.3% 1_394del;1067_1176del;1597_4681del
5 mouse 208884 Zdhhc9 zinc finger, DHHC domain co... NM_172465.4 93.4% 98.3% (many diffs)
6 mouse 208884 Zdhhc9 zinc finger, DHHC domain co... XM_006541454.3 93.4% 98.3% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1158
ORF length:
1092
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61tgggcatgtc tgtgatggtg gtgagaaaga aggtgacacg gaaatgggag aaactcccag
121gcaggaacac cttttgctgt gatggccgcg tcatgatggc ccggcaaaag ggcattttct
181acctgaccct tttcctcatc ctggggacat gtacactctt cttcgccttt gagtgccgct
241acctggctgt tcagctgtct cctgccatcc ctgtatttgc tgccatgctc ttccttttct
301ccatggctac actgttgagg accagcttca gtgaccctgg agtgattcct cgggcgctac
361cagatgaagc agctttcata gaaatggaga tagaagctac caatggtgcg gtgccccagg
421gccagcgacc accgcctcgt atcaagaatt tccagataaa caaccagatt gtgaaactga
481aatactgtta cacatgcaag atcttccggc ctccccgggc ctcccattgc agcatctgtg
541acaactgtgt ggagcgcttc gaccatcact gcccctgggt ggggaattgt gttggaaaga
601ggaactaccg ctacttctac ctcttcatcc tttctctctc cctcctcaca atctatgtct
661tcgccttcaa catcgtctat gtggccctca aatctttgaa aattggcttc ttggagacat
721tgaaagaaac tcctggaact gttctagaag tcctcatttg cttctttaca ctctggtccg
781tcgtgggact gactggattt catactttcc tcgtggctct caaccagaca accaatgaag
841acatcaaagg atcatggaca gggaagaatc gcgtccagaa tccctacagc catggcaata
901ttgtgaagaa ctgctgtgaa gtgctgtgtg gccccttgcc ccccagtgtg ctggatcgaa
961ggggtatttt gccactggag gaaagtggaa gtcgacctcc cagtactcaa gagaccagta
1021gcagcctctt gccacagagc ccagccccca cagaacacct gaactcaaat gagatgccgg
1081aggacagcag cactcccgaa gagatgccac ctccagagcc cccagagcca ccacaggagg
1141cagctgaagc tgagaagtac ccaactttct tgtacaaagt ggttggtaag cctatcccta
1201accctctcct cggtctcgat tctacgtagt aatgagctag cgctaaccgg tggcgcgtta
1261agtcgacaat caacctctgg atta

Download FASTA (ORF) (Full)

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