Construct: ORF ccsbBroad304_03306

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF008652.1_s304c1, BRDN0000400703
Derived from:
ccsbBroadEn_03306
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
SCARA3 (51435)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_03306
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 51435 SCARA3 scavenger receptor class A ... NM_182826.1 100% 100%
2 human 51435 SCARA3 scavenger receptor class A ... XM_017013537.1 95.9% 93.8% (many diffs)
3 human 51435 SCARA3 scavenger receptor class A ... XM_017013536.2 94.3% 92.5% (many diffs)
4 human 51435 SCARA3 scavenger receptor class A ... NM_016240.3 75.8% 74.3% (many diffs)
5 human 51435 SCARA3 scavenger receptor class A ... XM_017013535.1 75.8% 74.3% (many diffs)
6 human 51435 SCARA3 scavenger receptor class A ... XR_949419.2 35.2% 1_312del;1711_3968del
7 mouse 219151 Scara3 scavenger receptor class A,... XM_017315980.1 68.6% 70.3% (many diffs)
8 mouse 219151 Scara3 scavenger receptor class A,... NM_172604.3 65.9% 67.5% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1464
ORF length:
1398
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatgaa agtgaggtcg gccggcggcg atggagatgc cttgtgcgtt acagaagagg
121acctggcggg tgacgacgag gacatgccga ccttcccatg cacccagaag ggccggccag
181ggccccgctg cagccgctgc cagaagaacc tatctttgca cacatcggtg cggattcttt
241acctcttcct ggccctgctc ctggtggccg tggctgtgtt ggcctctctg gttttcagaa
301aagtggactc tctctccgaa gacatctcct tgacccagtc tatttatgac aagaagcttg
361tgttaatgca gaaaaatctc cagggcctgg atccgaaagc cctgaacaac tgctctttct
421gccatgaagc tgggcagctg gggccagaga tccgaaaact gcaggaggag ctggagggaa
481ttcagaagct gcttctggcc caggaggtgc agctggacca gaccttacag gcccaggagg
541tgctctccac caccagcaga caaatctccc aggagatggg cagttgctcc ttctccatcc
601accaggttaa ccagtctctg gggctcttcc tggcccaggt gagaggctgg caggccacca
661cagctggcct ggacctctct ctgaaggacc tcacccagga gtgctacgat gtcaaggctg
721cagtgcacca gatcaacttc accgtggggc agacttccga gtggatccac gggatccagc
781ggaagacaga cgaggagacc ctgaccctcc agaagattgt caccgactgg cagaactaca
841cacggctctt cagcggcctg cgcaccacct ccaccaagac tggagaggcg gtcaagaaca
901tccaggccac cctgggggcc tcctcacagc gcatcagcca gaactcagag agcatgcacg
961acctggtact ccaggtcatg ggcttgcagc tgcagctgga taacatctcg tccttcctgg
1021atgaccacga agagaacatg catgatcttc agtaccatac ccactacgcc cagaaccgca
1081ctgtggagag gtttgagtct ctggaaggac gcatggcttc tcacgagatt gaaattggca
1141ccatcttcac caacatcaat gccaccgaca accacgtgca cagcatgctc aagtacctgg
1201atgacgtgcg gctctcctgc acgctgggct tccacaccca tgccgaggag ctctactacc
1261tgaacaagtc tgtctccatc atgctgggca ccacagacct gctccgggag cgcttcagcc
1321tgctcagtgc ccggctggac ctcaacgtcc ggaacctctc catgatcgtg gaggagatga
1381aggcagtgga cacacagcat ggagaaatcc ttcgcaatgt caccatccta cgaggtcaca
1441ctttgttttc acataatcgg atatgcccaa ctttcttgta caaagtggtt ggtaagccta
1501tccctaaccc tctcctcggt ctcgattcta cgtagtaatg agctagcgct aaccggtggc
1561gcgttaagtc gacaatcaac ctctggatta

Download FASTA (ORF) (Full)