Construct: ORF ccsbBroad304_03616

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF018182.1_s304c1, BRDN0000403944
Derived from:
ccsbBroadEn_03616
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
DEPDC1 (55635)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_03616
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 55635 DEPDC1 DEP domain containing 1 NM_017779.6 100% 100%
2 human 55635 DEPDC1 DEP domain containing 1 NM_001114120.3 64.9% 64.8% 911_1762del
3 mouse 76131 Depdc1a DEP domain containing 1a NM_001172093.1 87.2% 85.2% (many diffs)
4 mouse 76131 Depdc1a DEP domain containing 1a NM_001172092.1 57.2% 55.8% (many diffs)
5 mouse 76131 Depdc1a DEP domain containing 1a NM_029523.3 56.9% 55.5% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1647
ORF length:
1581
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatgga gagtcagggt gtgcctcccg ggccttatcg ggccaccaag ctgtggaatg
121aagttaccac atcttttcga gcaggaatgc ctctaagaaa acacagacaa cactttaaaa
181aatatggcaa ttgtttcaca gcaggagaag cagtggattg gctttatgac ctattaagaa
241ataatagcaa ttttggtcct gaagttacaa ggcaacagac tatccaactg ttgaggaaat
301ttcttaagaa tcatgtaatt gaagatatca aagggaggtg gggatcagaa aatgttgatg
361ataacaacca gctcttcaga tttcctgcaa cttcgccact taaaactcta ccacgaaggt
421atccagaatt gagaaaaaac aacatagaga acttttccaa agataaagat agcattttta
481aattacgaaa cttatctcgt agaactccta aaaggcatgg attacattta tctcaggaaa
541atggcgagaa aataaagcat gaaataatca atgaagatca agaaaatgca attgataata
601gagaactaag ccaggaagat gttgaagaag tttggagata tgttattctg atctacctgc
661aaaccatttt aggtgtgcca tccctagaag aagtcataaa tccaaaacaa gtaattcccc
721aatatataat gtacaacatg gccaatacaa gtaaacgtgg agtagttata ctacaaaaca
781aatcagatga cctccctcac tgggtattat ctgccatgaa gtgcctagca aattggccaa
841gaagcaatga tatgaataat ccaacttatg ttggatttga acgagatgta ttcagaacaa
901tcgcagatta ttttctagat ctccctgaac ctctacttac ttttgaatat tacgaattat
961ttgtaaacat tttgggcttg ctgcaacctc atttagagag ggttgccatc gatgctctac
1021agttatgttg tttgttactt cccccaccaa atcgtagaaa gcttcaactt ttaatgcgta
1081tgatttcccg aatgagtcaa aatgttgata tgcccaaact tcatgatgca atgggtacga
1141ggtcactgat gatacatacc ttttctcgat gtgtgttatg ctgtgctgaa gaagtggatc
1201ttgatgagct tcttgctgga agattagttt ctttcttaat ggatcatcat caggaaattc
1261ttcaagtacc ctcttactta cagactgcag tggaaaaaca tcttgactac ttaaaaaagg
1321gacatattga aaatcctgga gatggactat ttgctccttt gccaacttac tcatactgta
1381agcagattag tgctcaggag tttgatgagc aaaaagtttc tacctctcaa gctgcaattg
1441cagaactttt agaaaatatt attaaaaaca ggagtttacc tctaaaggag aaaagaaaaa
1501aactaaaaca gtttcagaag gaatatcctt tgatatatca gaaaagattt ccaaccacgg
1561agagtgaagc agcacttttt ggtgacaaac ctacaatcaa gcaaccaatg ctgattttaa
1621gaaaaccaaa gttccgtagt ctaagatacc caactttctt gtacaaagtg gttggtaagc
1681ctatccctaa ccctctcctc ggtctcgatt ctacgtagta atgagctagc gctaaccggt
1741ggcgcgttaa gtcgacaatc aacctctgga tta

Download FASTA (ORF) (Full)