Construct: ORF ccsbBroad304_03708

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF002014.1_s304c1, BRDN0000401529
Derived from:
ccsbBroadEn_03708
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
PCDHA4 (56144)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_03708
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 56144 PCDHA4 protocadherin alpha 4 NM_031500.3 100% 100%
2 human 56144 PCDHA4 protocadherin alpha 4 NM_018907.4 84.1% 83.9% (many diffs)
3 human 9752 PCDHA9 protocadherin alpha 9 NM_014005.4 79.1% 77.3% (many diffs)
4 human 9752 PCDHA9 protocadherin alpha 9 NM_031857.1 70.6% 68.4% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
2463
ORF length:
2394
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcaccat ggagttttcc tggggaagcg gccaggaatc ccggcgtctg ctgctcttac
121ttcttctcct cgcagcctgg gaggcaggga acggtcagct ccactactcg gtctccgagg
181aggccaaaca cggcaccttc gtgggccgca tcgcgcagga cctgggactg gagctggcgg
241agctggtgcc gcgcctgttc cgggtggcgt ccaagggccg cggaggcctt ctggaggtaa
301atctgcagaa tggcattttg tttgtgaatt ctcggatcga ccgggaggag ctgtgccggc
361ggagcgcgga gtgcagcatc cacctggagg tgatcgtaga caggccgctg caggttttcc
421atgtggacgt ggaggtgagg gacattaacg ataacccgcc ggtgttccca gcaacacaaa
481agaacctgtc catcgcggaa tccaggccgc ttgactctcg gtttccacta gagggcgcct
541cggatgcaga tatcggggag aacgccctgc tcacttacag actgagccca aatgaatact
601tttctctgga aaaaccacct gatgacgagc tggtaaaagg tcttgggctt atattacgga
661aatctttaga cagagaagaa gctccggaga tttttttagt gctcacagcc actgatggag
721gcaaacccga gttgactggc accgttcagt tactcatcac agtactggat gccaatgaca
781atgccccagc ttttgacaga accatttata aggtgagatt actagaaaat gttcctaatg
841gaacattggt aattaaactt aacgcctcag atttagacga aggattgaat ggggacattg
901tttattcatt ctcaaatgat atttcgccaa atgtgaaatc caagtttcac atagatccaa
961ttactggaca aattattgta aagggatata ttgactttga agaaagcaaa tcctatgaaa
1021ttattgtaga gggcattgat aagggacagc tcccactttc tggccattgt agagttattg
1081tggaagtaga agacaacaac gataatgtcc cagatttgga attcaagtct ttatcacttc
1141caattagaga ggacgctcca ctgggtacag tcatcgccct gatcagcgtg tccgacaaag
1201acatgggtgt caatgggctg gtcacctgct ccttgacgtc ccacgtcccc ttcaagctgg
1261tgtccacctt caagaattac tactcgttgg tgctggacag tgccctggac cgcgagagcg
1321tgtcagccta tgagctggtg gtgaccgcgc gagacggggg ctcgccttcg ctgtgggcca
1381cggccagtgt ttctgtggag gtggctgatg tgaacgacaa cgctccggcg ttcgcgcagc
1441ccgagtacac agtgttcgtg aaggagaaca acccgccggg ctgccacatc ttcactgtgt
1501ctgcgtggga cgcggacgcg caggagaacg cgctggtgtc ctactcgctg gtagagcggc
1561gggtagggga gcgcgcgctg tcgagctacg tttcggtgca tgcggagagc ggcaaggtgt
1621acgcgctgca gccgctggac cacgaggagc tagagctgct gcagtttcag gtgaccgctc
1681gcgatgccgg cgtgccacct ctgggcagca acgtgacgct gcaggtgttc gtgctggacg
1741aaaacgacaa cgcgccagca ctgctagcgc ctcgggcggg tggcactggt ggcgcagtga
1801gcgagctggt gccatggtcg gtgggtgtgg gccacgtggt ggcaaaggtg cgcgcggtgg
1861atgctgactc gggctacaac gcgtggcttt cgtacgagct gcagccgggg actggtggcg
1921cgcgcatccc gttccgcgtg gggctgtaca ctggcgagat cagcacaacg cgtgccctgg
1981acgaaacgga cgctccgcgc caccgcctac tggtactggt gaaggaccac ggcgagcccg
2041cgctgacggc cacggccact gtgctggtgt cacttgtgga gagtggacag gcgccaaagg
2101cctcctcacg ggcgttggtg ggcgctgtgg gtcccgatgc tgcgctggtg gatgtcaacg
2161tatacctgat cattgccatc tgcgcggtgt ccagcctttt ggtgctcacg ctgctgctgt
2221acaccgcgct gcggtgctct gcgctgccca ccgagggcgc gtgcgctccg ggcaagccca
2281cgctggtgtg ctccagtgcg gtggggagct ggtcatactc gcagcagagg aggccgaggg
2341tgtgctctgg tgagggccca cccaagaccg acctcatggc cttcagcccc agtttacctg
2401actctaggga cagagaagat cagctgcaga caactgagga atcctttgca aaggttagtg
2461tattgccaac tttcttgtac aaagtggttg gtaagcctat ccctaaccct ctcctcggtc
2521tcgattctac gtagtaatga gctagcgcta accggtggcg cgttaagtcg acaatcaacc
2581tctggatta

Download FASTA (ORF) (Full)