Construct: ORF ccsbBroadEn_03708

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF002014.1_s300c1, BRDN0000387822
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
PCDHA4 (56144)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 56144 PCDHA4 protocadherin alpha 4 NM_031500.3 100% 100%
2 human 56144 PCDHA4 protocadherin alpha 4 NM_018907.4 84.1% 83.9% (many diffs)
3 human 9752 PCDHA9 protocadherin alpha 9 NM_014005.4 79.1% 77.3% (many diffs)
4 human 9752 PCDHA9 protocadherin alpha 9 NM_031857.1 70.6% 68.4% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
2463
ORF length:
2394
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG
61TTGGCACCAT GGAGTTTTCC TGGGGAAGCG GCCAGGAATC CCGGCGTCTG CTGCTCTTAC
121TTCTTCTCCT CGCAGCCTGG GAGGCAGGGA ACGGTCAGCT CCACTACTCG GTCTCCGAGG
181AGGCCAAACA CGGCACCTTC GTGGGCCGCA TCGCGCAGGA CCTGGGACTG GAGCTGGCGG
241AGCTGGTGCC GCGCCTGTTC CGGGTGGCGT CCAAGGGCCG CGGAGGCCTT CTGGAGGTAA
301ATCTGCAGAA TGGCATTTTG TTTGTGAATT CTCGGATCGA CCGGGAGGAG CTGTGCCGGC
361GGAGCGCGGA GTGCAGCATC CACCTGGAGG TGATCGTAGA CAGGCCGCTG CAGGTTTTCC
421ATGTGGACGT GGAGGTGAGG GACATTAACG ATAACCCGCC GGTGTTCCCA GCAACACAAA
481AGAACCTGTC CATCGCGGAA TCCAGGCCGC TTGACTCTCG GTTTCCACTA GAGGGCGCCT
541CGGATGCAGA TATCGGGGAG AACGCCCTGC TCACTTACAG ACTGAGCCCA AATGAATACT
601TTTCTCTGGA AAAACCACCT GATGACGAGC TGGTAAAAGG TCTTGGGCTT ATATTACGGA
661AATCTTTAGA CAGAGAAGAA GCTCCGGAGA TTTTTTTAGT GCTCACAGCC ACTGATGGAG
721GCAAACCCGA GTTGACTGGC ACCGTTCAGT TACTCATCAC AGTACTGGAT GCCAATGACA
781ATGCCCCAGC TTTTGACAGA ACCATTTATA AGGTGAGATT ACTAGAAAAT GTTCCTAATG
841GAACATTGGT AATTAAACTT AACGCCTCAG ATTTAGACGA AGGATTGAAT GGGGACATTG
901TTTATTCATT CTCAAATGAT ATTTCGCCAA ATGTGAAATC CAAGTTTCAC ATAGATCCAA
961TTACTGGACA AATTATTGTA AAGGGATATA TTGACTTTGA AGAAAGCAAA TCCTATGAAA
1021TTATTGTAGA GGGCATTGAT AAGGGACAGC TCCCACTTTC TGGCCATTGT AGAGTTATTG
1081TGGAAGTAGA AGACAACAAC GATAATGTCC CAGATTTGGA ATTCAAGTCT TTATCACTTC
1141CAATTAGAGA GGACGCTCCA CTGGGTACAG TCATCGCCCT GATCAGCGTG TCCGACAAAG
1201ACATGGGTGT CAATGGGCTG GTCACCTGCT CCTTGACGTC CCACGTCCCC TTCAAGCTGG
1261TGTCCACCTT CAAGAATTAC TACTCGTTGG TGCTGGACAG TGCCCTGGAC CGCGAGAGCG
1321TGTCAGCCTA TGAGCTGGTG GTGACCGCGC GAGACGGGGG CTCGCCTTCG CTGTGGGCCA
1381CGGCCAGTGT TTCTGTGGAG GTGGCTGATG TGAACGACAA CGCTCCGGCG TTCGCGCAGC
1441CCGAGTACAC AGTGTTCGTG AAGGAGAACA ACCCGCCGGG CTGCCACATC TTCACTGTGT
1501CTGCGTGGGA CGCGGACGCG CAGGAGAACG CGCTGGTGTC CTACTCGCTG GTAGAGCGGC
1561GGGTAGGGGA GCGCGCGCTG TCGAGCTACG TTTCGGTGCA TGCGGAGAGC GGCAAGGTGT
1621ACGCGCTGCA GCCGCTGGAC CACGAGGAGC TAGAGCTGCT GCAGTTTCAG GTGACCGCTC
1681GCGATGCCGG CGTGCCACCT CTGGGCAGCA ACGTGACGCT GCAGGTGTTC GTGCTGGACG
1741AAAACGACAA CGCGCCAGCA CTGCTAGCGC CTCGGGCGGG TGGCACTGGT GGCGCAGTGA
1801GCGAGCTGGT GCCATGGTCG GTGGGTGTGG GCCACGTGGT GGCAAAGGTG CGCGCGGTGG
1861ATGCTGACTC GGGCTACAAC GCGTGGCTTT CGTACGAGCT GCAGCCGGGG ACTGGTGGCG
1921CGCGCATCCC GTTCCGCGTG GGGCTGTACA CTGGCGAGAT CAGCACAACG CGTGCCCTGG
1981ACGAAACGGA CGCTCCGCGC CACCGCCTAC TGGTACTGGT GAAGGACCAC GGCGAGCCCG
2041CGCTGACGGC CACGGCCACT GTGCTGGTGT CACTTGTGGA GAGTGGACAG GCGCCAAAGG
2101CCTCCTCACG GGCGTTGGTG GGCGCTGTGG GTCCCGATGC TGCGCTGGTG GATGTCAACG
2161TATACCTGAT CATTGCCATC TGCGCGGTGT CCAGCCTTTT GGTGCTCACG CTGCTGCTGT
2221ACACCGCGCT GCGGTGCTCT GCGCTGCCCA CCGAGGGCGC GTGCGCTCCG GGCAAGCCCA
2281CGCTGGTGTG CTCCAGTGCG GTGGGGAGCT GGTCATACTC GCAGCAGAGG AGGCCGAGGG
2341TGTGCTCTGG TGAGGGCCCA CCCAAGACCG ACCTCATGGC CTTCAGCCCC AGTTTACCTG
2401ACTCTAGGGA CAGAGAAGAT CAGCTGCAGA CAACTGAGGA ATCCTTTGCA AAGGTTAGTG
2461TATTGCCAAC TTTCTTGTAC AAAGTtggca ttataagaaa gcattgctta tcaatttgtt
2521gcaacgaac

Download FASTA (ORF) (Full)

GPP Web Portal Terms of Service

Effective Date: December 8, 2025
By using this site, you agree to our terms and conditions below.

Overview of Terms

The data made available on this website were generated for research purposes and are not intended for clinical or commercial uses. Commercial use (or other use for profit-making purposes) of the GPP Web Portal and its tools, is not permitted under these terms and may require a separate license agreement from Broad or its contributors. For more information, please contact partnering@broadinstitute.org.

The original data may be subject to rights claimed by third parties, including but not limited to, patent, copyright, other intellectual property rights, biodiversity-related access and benefit-sharing rights. It is the responsibility of users of Broad Institute services to ensure that their use of the data does not infringe any of the rights of such third parties.

Any questions or comments concerning these Terms of Use can be addressed to: legal@broadinstitute.org.

By accessing and viewing this GPP Web Portal, you agree to the following terms and conditions:

Attribution

You agree to acknowledge the Broad Institute (e.g., in publications, services or products) for any of your use of its online services, databases or software in accordance with good scientific practice. You agree to use the acknowledgment wording provided for the relevant tools as indicated on the FAQ for each tool.

Updating the Terms of Use

We reserve the right to update these Terms of Use at any time. When alterations are inevitable, we will attempt to give reasonable notice of any changes by placing a notice on our website, but you may wish to check each time you use the website. The date of the most recent revision will appear on this, the "GPP Web Portal Terms of Use" page. If you do not agree to these changes, please do not continue to use our online services. We will also make available an archived copy of the previous Terms of Use for comparison.

Indemnification and Disclaimer of Warranties

You are using this GPP Web Portal at your own risk, and you hereby agree to hold Broad and its contributors and their trustees, directors, officers, employees, and affiliated investigators harmless for any third party claims which may arise from your use of the GPP Web Portal, the tools available therein, or any portion thereof. Further, you agree to indemnify Broad, its contributors, and its and their trustees, directors, officers, employees, affiliated investigators, students, and affiliates for any loss, costs, claims, damages, or other liabilities arising from any unpermitted commercial or profit-making use you make of the GPP Web Portal. The GPP Web Portal is a research tool and is provided "as is". Broad does not represent that the GPP Web Portal is free of errors or bugs or suitable for any particular tasks.

ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER DEFECTS ARE DISCLAIMED. IN NO EVENT SHALL BROAD OR ITS CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THE GPP WEB PORTAL, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Governing Law

The terms and conditions herein shall be construed, governed, interpreted, and applied in accordance with the internal laws of the Commonwealth of Massachusetts, U.S.A. Furthermore, by accessing, downloading, or using the Database, You consent to the personal jurisdiction of, and venue in, the state and federal courts within Massachusetts with respect to Your download or use of the Database.