Construct: ORF ccsbBroad304_03875

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF004780.1_s304c1, BRDN0000400688
Derived from:
ccsbBroadEn_03875
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
PLEKHA1 (59338)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_03875
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 59338 PLEKHA1 pleckstrin homology domain ... NM_001001974.3 100% 100%
2 human 59338 PLEKHA1 pleckstrin homology domain ... NM_021622.4 100% 100%
3 human 59338 PLEKHA1 pleckstrin homology domain ... XM_005270016.2 100% 100%
4 human 59338 PLEKHA1 pleckstrin homology domain ... XM_017016480.1 100% 100%
5 human 59338 PLEKHA1 pleckstrin homology domain ... XM_017016481.1 100% 100%
6 human 59338 PLEKHA1 pleckstrin homology domain ... XM_017016482.1 100% 100%
7 human 59338 PLEKHA1 pleckstrin homology domain ... XM_024448111.1 100% 100%
8 human 59338 PLEKHA1 pleckstrin homology domain ... XM_024448112.1 100% 100%
9 human 59338 PLEKHA1 pleckstrin homology domain ... XM_024448113.1 100% 100%
10 human 59338 PLEKHA1 pleckstrin homology domain ... XM_024448114.1 100% 100%
11 human 59338 PLEKHA1 pleckstrin homology domain ... NM_001330178.2 88.4% 72.3% 901_941del;1149_1150ins104
12 human 59338 PLEKHA1 pleckstrin homology domain ... XM_017016486.1 88.4% 72.3% 901_941del;1149_1150ins104
13 human 59338 PLEKHA1 pleckstrin homology domain ... XM_017016487.1 88.4% 72.3% 901_941del;1149_1150ins104
14 human 59338 PLEKHA1 pleckstrin homology domain ... XM_017016488.1 88.4% 72.3% 901_941del;1149_1150ins104
15 human 59338 PLEKHA1 pleckstrin homology domain ... XM_024448115.1 88.4% 72.3% 901_941del;1149_1150ins104
16 human 59338 PLEKHA1 pleckstrin homology domain ... XM_024448116.1 88.4% 72.3% 901_941del;1149_1150ins104
17 human 59338 PLEKHA1 pleckstrin homology domain ... XM_024448117.1 88.4% 72.3% 901_941del;1149_1150ins104
18 human 59338 PLEKHA1 pleckstrin homology domain ... XM_005270019.2 86.3% 76.2% 901_971del;1179_1180ins104
19 human 59338 PLEKHA1 pleckstrin homology domain ... XM_017016483.1 86.3% 76.2% 901_971del;1179_1180ins104
20 human 59338 PLEKHA1 pleckstrin homology domain ... XM_017016484.1 86.3% 76.2% 901_971del;1179_1180ins104
21 human 59338 PLEKHA1 pleckstrin homology domain ... XM_017016485.1 86.3% 76.2% 901_971del;1179_1180ins104
22 human 59338 PLEKHA1 pleckstrin homology domain ... XM_017016479.2 84.3% 75% 901_1006del;1218_1219ins100
23 human 59338 PLEKHA1 pleckstrin homology domain ... XM_011540017.1 82.4% 74.6% 901_1036del;1248_1249ins100
24 human 59338 PLEKHA1 pleckstrin homology domain ... XM_011540018.1 82.4% 74.6% 901_1036del;1248_1249ins100
25 human 59338 PLEKHA1 pleckstrin homology domain ... XM_011540019.1 82.4% 74.6% 901_1036del;1248_1249ins100
26 human 59338 PLEKHA1 pleckstrin homology domain ... XM_011540021.1 82.4% 74.6% 901_1036del;1248_1249ins100
27 human 59338 PLEKHA1 pleckstrin homology domain ... XM_011540022.1 82.4% 74.6% 901_1036del;1248_1249ins100
28 human 59338 PLEKHA1 pleckstrin homology domain ... XM_011540024.1 82.4% 74.6% 901_1036del;1248_1249ins100
29 human 59338 PLEKHA1 pleckstrin homology domain ... XM_017016478.2 82.4% 74.6% 901_1036del;1248_1249ins100
30 human 59338 PLEKHA1 pleckstrin homology domain ... XM_024448107.1 82.4% 74.6% 901_1036del;1248_1249ins100
31 human 59338 PLEKHA1 pleckstrin homology domain ... XM_024448108.1 82.4% 74.6% 901_1036del;1248_1249ins100
32 human 59338 PLEKHA1 pleckstrin homology domain ... XM_024448109.1 82.4% 74.6% 901_1036del;1248_1249ins100
33 human 59338 PLEKHA1 pleckstrin homology domain ... XM_024448110.1 82.4% 74.6% 901_1036del;1248_1249ins100
34 human 59338 PLEKHA1 pleckstrin homology domain ... XM_017016489.2 81.2% 73.3% (many diffs)
35 human 59338 PLEKHA1 pleckstrin homology domain ... NM_001195608.1 79.8% 74.5% (many diffs)
36 human 59338 PLEKHA1 pleckstrin homology domain ... XM_005270021.5 79.8% 74.5% (many diffs)
37 human 59338 PLEKHA1 pleckstrin homology domain ... XM_017016490.1 79.8% 74.5% (many diffs)
38 human 59338 PLEKHA1 pleckstrin homology domain ... XM_017016491.1 79.8% 74.5% (many diffs)
39 mouse 101476 Plekha1 pleckstrin homology domain ... XM_006507145.1 88.3% 92% (many diffs)
40 mouse 101476 Plekha1 pleckstrin homology domain ... NM_001346515.1 78.9% 71.1% (many diffs)
41 mouse 101476 Plekha1 pleckstrin homology domain ... XM_006507149.3 78.9% 71.1% (many diffs)
42 mouse 101476 Plekha1 pleckstrin homology domain ... NM_133942.2 77.5% 80.1% (many diffs)
43 mouse 101476 Plekha1 pleckstrin homology domain ... XM_006507146.1 77% 73.3% (many diffs)
44 mouse 101476 Plekha1 pleckstrin homology domain ... XM_006507147.1 77% 69.5% (many diffs)
45 mouse 101476 Plekha1 pleckstrin homology domain ... XM_006507140.1 75.3% 72.7% (many diffs)
46 mouse 101476 Plekha1 pleckstrin homology domain ... XM_006507141.3 75.3% 72.7% (many diffs)
47 mouse 101476 Plekha1 pleckstrin homology domain ... XM_006507142.3 75.3% 72.7% (many diffs)
48 mouse 101476 Plekha1 pleckstrin homology domain ... XM_006507143.3 75.3% 72.7% (many diffs)
49 mouse 101476 Plekha1 pleckstrin homology domain ... XM_017321904.1 75.3% 72.7% (many diffs)
50 mouse 101476 Plekha1 pleckstrin homology domain ... XM_006507152.1 74.6% 72.7% (many diffs)
51 mouse 101476 Plekha1 pleckstrin homology domain ... XM_006507153.2 73% 72.6% (many diffs)
52 mouse 101476 Plekha1 pleckstrin homology domain ... XM_006507150.1 65.3% 61.6% (many diffs)
53 mouse 101476 Plekha1 pleckstrin homology domain ... XM_006507151.3 65.3% 61.6% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1278
ORF length:
1212
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatgcc ttatgtggat cgtcagaatc gcatttgtgg ttttctagac attgaagaaa
121atgaaaacag tgggaaattt cttcgaaggt acttcatact ggataccaga gaagatagtt
181tcgtgtggta catggataat ccacagaacc taccttctgg atcatcacgt gttggagcca
241ttaagcttac ctacatttca aaggttagcg atgctactaa gctaaggcca aaggcggagt
301tctgttttgt tatgaatgca ggaatgagga agtacttcct acaagccaat gatcagcagg
361acctagtgga atgggtaaat gtgttaaaca aagctataaa aattacagta ccaaagcagt
421cagactcaca gcctaattct gataacctaa gtcgccatgg tgaatgtggg aaaaagcaag
481tgtcttacag aactgatatt gttggtggcg tacccatcat tactcccact cagaaagaag
541aagtaaatga atgtggtgaa agtattgaca gaaataatct gaaacggtca caaagccatc
601ttccttactt tactcctaaa ccacctcaag atagtgcggt tatcaaagct ggatattgtg
661taaaacaagg agcagtgatg aaaaactgga agagaagata ttttcaattg gatgaaaaca
721caataggcta cttcaaatct gaactggaaa aggaacctct tcgtgtaata ccacttaaag
781aggttcataa agtccaggaa tgtaagcaaa gcgacataat gatgagggac aacctctttg
841aaattgtaac aacgtctcga actttctatg tgcaggctga tagccctgaa gagatgcaca
901gttggattaa agcagtctct ggcgccattg tagcacagcg gggtcccggc agatctgcgt
961cttctgagca tccccccggt ccttcagaat ccaaacacgc tttccgtcct accaacgcag
1021ccaccgccac ctcacattcc acagcctctc gcagcaactc tttggtctca acctttacca
1081tggagaagcg aggattttac gagtctcttg ccaaggtcaa gccagggaac ttcaaggtcc
1141agactgtctc tccaagagaa ccagcttcca aagtgactga acaagctctg ttaagacctc
1201aaagtaaaaa tggccctcag gaaaaagatt gtgacctagt agacttggac gatgcgagcc
1261ttccggtcag tgacgtgtgc ccaactttct tgtacaaagt ggttggtaag cctatcccta
1321accctctcct cggtctcgat tctacgtagt aatgagctag cgctaaccgg tggcgcgtta
1381agtcgacaat caacctctgg atta

Download FASTA (ORF) (Full)