Construct: ORF ccsbBroad304_03904

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF011146.1_s304c1, BRDN0000411005
Derived from:
ccsbBroadEn_03904
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
FAM204A (63877)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_03904
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 63877 FAM204A family with sequence simila... NM_001134672.2 100% 100%
2 human 63877 FAM204A family with sequence simila... NM_022063.3 100% 100%
3 human 63877 FAM204A family with sequence simila... XM_005270024.1 97% 97% 1_21del
4 human 63877 FAM204A family with sequence simila... XR_945795.1 11.9% 1_59del;601_707del;866_5836del
5 human 63877 FAM204A family with sequence simila... XR_001747176.2 11.5% 1_265del;807_913del;1072_6042del
6 human 63877 FAM204A family with sequence simila... XR_001747175.1 11.2% 1_444del;986_1092del;1251_6221del
7 mouse 76539 Fam204a family with sequence simila... NM_029648.6 83.6% 78.8% (many diffs)
8 mouse 76539 Fam204a family with sequence simila... XM_006527443.3 83.6% 78.8% (many diffs)
9 mouse 76539 Fam204a family with sequence simila... XM_006527444.3 83.6% 78.8% (many diffs)
10 mouse 76539 Fam204a family with sequence simila... XM_006527445.3 83.6% 78.8% (many diffs)
11 mouse 76539 Fam204a family with sequence simila... XM_006527446.3 83.6% 78.8% (many diffs)
12 mouse 76539 Fam204a family with sequence simila... XM_006527447.2 83.6% 78.8% (many diffs)
13 mouse 76539 Fam204a family with sequence simila... XM_006527448.2 49.2% 48.9% (many diffs)
14 mouse 76539 Fam204a family with sequence simila... XM_006527449.2 49.2% 48.9% (many diffs)
15 mouse 76539 Fam204a family with sequence simila... XM_006527450.2 49.2% 48.9% (many diffs)
16 mouse 76539 Fam204a family with sequence simila... XM_017318307.1 49.2% 48.9% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
765
ORF length:
699
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatgtg gagtgggctg ctacctcctg gcctaaatga aagtgacgct gagtcaaact
121cggaagatga agctacgttg gagaactctg gacttaactt acaggaagat aaagaggatg
181agagcatcag aaaaacagaa atcatagatt tctcaacaga tgaaccaaaa actgaaacag
241agtcaaatgt aaatgcctat gaagagtgtc cttctggaat tcccatagat atgtggaata
301aatttcaaga attgcataaa aaacattctg aacagaaaag cacaacctca agattcagag
361ggaaaagaag aaaacgctcc agaaaagata aattgaagaa tgaaaaagaa ttacatagtg
421aaccgtcctc aaatgaaacc cagtggaaag agcttactca gtattttgga gtcaatgata
481gatttgaccc gcctgttaaa aggaaaaaag ttgagaagtc aggccttgaa aagaggatag
541accaggctgt ggaggagtgg aatattgaga aggctgagga actcagcaac cagctagcta
601ctcgagagct tggtgtaaaa attgccaaag cagttgcctg ccacaacttt gtaaaagcca
661aaaaggaggt tgaaaattca caggctgccc gaaaaaagaa gaaacttgca tgggggtttg
721aagcaaagaa gagatgggaa accaaaagca acatgggata catgtaccca actttcttgt
781acaaagtggt tggtaagcct atccctaacc ctctcctcgg tctcgattct acgtagtaat
841gagctagcgc taaccggtgg cgcgttaagt cgacaatcaa cctctggatt a

Download FASTA (ORF) (Full)

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