Construct: ORF ccsbBroad304_04043

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF016449.1_s304c1, BRDN0000407598
Derived from:
ccsbBroadEn_04043
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
MLPH (79083)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_04043
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 79083 MLPH melanophilin NM_024101.7 100% 100%
2 human 79083 MLPH melanophilin XM_017004893.1 99.3% 98% (many diffs)
3 human 79083 MLPH melanophilin NM_001042467.3 95.3% 95.3% 1018_1019ins84
4 human 79083 MLPH melanophilin XM_006712737.1 93.3% 93.3% 555_556ins120
5 human 79083 MLPH melanophilin XM_006712739.1 91.3% 91.3% 1287_1288ins156
6 human 79083 MLPH melanophilin XM_006712740.1 88.6% 88.6% 555_556ins120;898_899ins84
7 human 79083 MLPH melanophilin XM_017004894.2 83.7% 82.3% (many diffs)
8 human 79083 MLPH melanophilin NM_001281473.2 80% 80% 555_556ins120;898_899ins84;1083_1084ins156
9 human 79083 MLPH melanophilin NM_001281474.2 76.1% 76.1% 673_674ins429
10 human 79083 MLPH melanophilin XM_011511812.1 75.6% 75.1% (many diffs)
11 human 79083 MLPH melanophilin NR_104019.2 45.7% 1_211del;1751_1939del;2201_3933del
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1866
ORF length:
1800
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatggg gaagaaactg gatctttcca agctcactga tgaagaggcc cagcatgtct
121tggaagttgt tcaacgagat tttgacctcc gaaggaaaga agaggaacgg ctagaggcgt
181tgaagggcaa gattaagaag gaaagctcca agagggagct gctttccgac actgcccatc
241tgaacgagac ccactgcgcc cgctgcctgc agccctacca gctgcttgtg aatagcaaaa
301ggcagtgcct ggaatgtggc ctcttcacct gcaaaagctg tggccgcgtc cacccggagg
361agcagggctg gatctgtgac ccctgccatc tggccagagt cgtgaagatc ggctcactgg
421agtggtacta tgagcatgtg aaagcccgct tcaagaggtt cggaagtgcc aaggtcatcc
481ggtccctcca cgggcggctg cagggtggag ctgggcctga actgatatct gaagagagaa
541gtggagacag cgaccagaca gatgaggatg gagaacctgg ctcagaggcc caggcccagg
601cccagccctt tggcagcaaa aaaaagcgcc tcctctccgt ccacgacttc gacttcgagg
661gagactcaga tgactccact cagcctcaag gtcactccct gcacctgtcc tcagtccctg
721aggccaggga cagcccacag tccctcacag atgagtcctg ctcagagaag gcagcccctc
781acaaggctga gggcctggag gaggctgata ctggggcctc tgggtgccac tcccatccgg
841aagagcagcc gaccagcatc tcaccttcca gacacggcgc cctggctgag ctctgcccgc
901ctggaggctc ccacaggatg gccctgggga ctgctgctgc actcgggtcg aatgtcatca
961ggaatgagca gctgcccctg cagtacttgg ccgatgtgga cacctctgat gaggaaagca
1021tccgggctca cgtgatggcc tcccaccatt ccaagcggag aggccgggcg tcttctgaga
1081gtcagatctt tgagctgaat aagcatattt cagctgtgga atgcctgctg acctacctgg
1141agaacacagt tgtgcctccc ttggccaagg gtctaggtgc tggagtgcgc acggaggccg
1201atgtagagga ggaggccctg aggaggaagc tggaggagct gaccagcaac gtcagtgacc
1261aggagacctc gtccgaggag gaggaagcca aggacgaaaa ggcagagccc aacagggaca
1321aatcagttgg gcctctcccc caggcggacc cggaggtggg cacggctgcc catcaaacca
1381acagacagga aaaaagcccc caggaccctg gggaccccgt ccagtacaac aggaccacag
1441atgaggagct gtcagagctg gaggacagag tggcagtgac ggcctcagaa gtccagcagg
1501cagagagcga ggtttcagac attgaatcca ggattgcagc cctgagggcc gcagggctca
1561cggtgaagcc ctcgggaaag ccccggagga agtcaaacct cccgatattt ctccctcgag
1621tggctgggaa acttggcaag agaccagagg acccaaatgc agacccttca agtgaggcca
1681aggcaatggc tgtgccctat cttctgagaa gaaagttcag taattccctg aaaagtcaag
1741gtaaagatga tgattctttt gatcggaaat cagtgtaccg aggctcgctg acacagagaa
1801accccaacgc gaggaaagga atggccagcc acaccttcgc gaaacctgtg gtggcccacc
1861agtcctaccc aactttcttg tacaaagtgg ttggtaagcc tatccctaac cctctcctcg
1921gtctcgattc tacgtagtaa tgagctagcg ctaaccggtg gcgcgttaag tcgacaatca
1981acctctggat ta

Download FASTA (ORF) (Full)

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