Construct: ORF ccsbBroad304_04137
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF003828.1_s304c1, BRDN0000403477
- Derived from:
- ccsbBroadEn_04137
- DNA Barcode:
- None
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ZDHHC11 (79844)
Vector Information:
- Vector Backbone:
- pLX_304
- Pol II Cassette 1:
- PGK-BlastR
- Pol II Cassette 2:
- CMV-ccsbBroad304_04137
- Selection Marker:
- BlastR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 79844 | ZDHHC11 | zinc finger DHHC-type conta... | NM_024786.2 | 100% | 100% | |
| 2 | human | 79844 | ZDHHC11 | zinc finger DHHC-type conta... | XM_024446212.1 | 100% | 100% | |
| 3 | human | 79844 | ZDHHC11 | zinc finger DHHC-type conta... | XM_024446210.1 | 88.2% | 88.2% | 402_566del |
| 4 | human | 653082 | ZDHHC11B | zinc finger DHHC-type conta... | NM_001351303.1 | 87.7% | 85.6% | (many diffs) |
| 5 | human | 653082 | ZDHHC11B | zinc finger DHHC-type conta... | XM_017010117.1 | 87.3% | 77.3% | (many diffs) |
| 6 | human | 79844 | ZDHHC11 | zinc finger DHHC-type conta... | XM_017009872.1 | 81.7% | 81.5% | 785_1060del |
| 7 | human | 79844 | ZDHHC11 | zinc finger DHHC-type conta... | XM_024446209.1 | 80.7% | 80.5% | 402_566del;950_1078del |
| 8 | human | 653082 | ZDHHC11B | zinc finger DHHC-type conta... | XM_017010110.1 | 77.1% | 68.5% | (many diffs) |
| 9 | human | 653082 | ZDHHC11B | zinc finger DHHC-type conta... | XM_017010111.1 | 77.1% | 68.5% | (many diffs) |
| 10 | human | 653082 | ZDHHC11B | zinc finger DHHC-type conta... | XM_017010112.1 | 77.1% | 68.5% | (many diffs) |
| 11 | human | 653082 | ZDHHC11B | zinc finger DHHC-type conta... | XM_017010113.2 | 77.1% | 68.5% | (many diffs) |
| 12 | human | 653082 | ZDHHC11B | zinc finger DHHC-type conta... | XM_017010114.2 | 77.1% | 68.5% | (many diffs) |
| 13 | human | 653082 | ZDHHC11B | zinc finger DHHC-type conta... | XM_017010115.2 | 77.1% | 68.5% | (many diffs) |
| 14 | human | 653082 | ZDHHC11B | zinc finger DHHC-type conta... | XM_024446188.1 | 74.9% | 70.5% | (many diffs) |
| 15 | human | 653082 | ZDHHC11B | zinc finger DHHC-type conta... | XM_017010116.2 | 74.1% | 68.3% | (many diffs) |
| 16 | human | 653082 | ZDHHC11B | zinc finger DHHC-type conta... | XM_024446189.1 | 74.1% | 68.3% | (many diffs) |
| 17 | human | 79844 | ZDHHC11 | zinc finger DHHC-type conta... | XM_017009869.1 | 73.7% | 73.5% | 402_566del;950_1225del |
| 18 | human | 79844 | ZDHHC11 | zinc finger DHHC-type conta... | XM_017009870.1 | 73.7% | 73.5% | 402_566del;950_1225del |
| 19 | human | 79844 | ZDHHC11 | zinc finger DHHC-type conta... | XM_017009871.1 | 73.7% | 73.5% | 402_566del;950_1225del |
| 20 | human | 79844 | ZDHHC11 | zinc finger DHHC-type conta... | XM_024446211.1 | 68% | 55% | (many diffs) |
| 21 | human | 79844 | ZDHHC11 | zinc finger DHHC-type conta... | XM_024446208.1 | 66.2% | 60.9% | (many diffs) |
| 22 | human | 79844 | ZDHHC11 | zinc finger DHHC-type conta... | XM_024446213.1 | 59.4% | 41.1% | (many diffs) |
| 23 | human | 79844 | ZDHHC11 | zinc finger DHHC-type conta... | XR_002956180.1 | 57% | (many diffs) | |
| 24 | human | 79844 | ZDHHC11 | zinc finger DHHC-type conta... | XM_017009875.2 | 56.9% | 37.1% | (many diffs) |
| 25 | human | 79844 | ZDHHC11 | zinc finger DHHC-type conta... | XM_024446214.1 | 56.2% | 42.9% | (many diffs) |
| 26 | human | 653082 | ZDHHC11B | zinc finger DHHC-type conta... | XM_017010118.1 | 55.7% | 40.9% | (many diffs) |
| 27 | human | 79844 | ZDHHC11 | zinc finger DHHC-type conta... | XM_024446216.1 | 55.6% | 42.5% | (many diffs) |
| 28 | human | 79844 | ZDHHC11 | zinc finger DHHC-type conta... | XM_017009878.1 | 55.1% | 36.5% | (many diffs) |
| 29 | human | 79844 | ZDHHC11 | zinc finger DHHC-type conta... | XM_024446215.1 | 54.1% | 42.5% | (many diffs) |
| 30 | human | 653082 | ZDHHC11B | zinc finger DHHC-type conta... | XM_017010119.1 | 52.5% | 42.5% | (many diffs) |
| 31 | human | 653082 | ZDHHC11B | zinc finger DHHC-type conta... | XM_017010120.1 | 48.8% | 42.4% | (many diffs) |
| 32 | human | 653082 | ZDHHC11B | zinc finger DHHC-type conta... | XM_017010121.1 | 48.8% | 42.4% | (many diffs) |
| 33 | human | 653082 | ZDHHC11B | zinc finger DHHC-type conta... | XM_017010122.1 | 48.7% | 42.4% | (many diffs) |
| 34 | human | 79844 | ZDHHC11 | zinc finger DHHC-type conta... | XM_024446217.1 | 45.8% | 44.7% | (many diffs) |
| 35 | human | 79844 | ZDHHC11 | zinc finger DHHC-type conta... | XM_024446218.1 | 45.3% | 44.7% | (many diffs) |
| 36 | human | 653082 | ZDHHC11B | zinc finger DHHC-type conta... | XM_017010123.1 | 45.3% | 37% | (many diffs) |
| 37 | human | 653082 | ZDHHC11B | zinc finger DHHC-type conta... | XM_017010124.1 | 45.3% | 37% | (many diffs) |
| 38 | human | 653082 | ZDHHC11B | zinc finger DHHC-type conta... | XM_017010125.1 | 45.3% | 37% | (many diffs) |
| 39 | human | 79844 | ZDHHC11 | zinc finger DHHC-type conta... | XR_002956179.1 | 43.4% | (many diffs) | |
| 40 | human | 79844 | ZDHHC11 | zinc finger DHHC-type conta... | XM_017009873.2 | 40.5% | 40% | 0_1ins622;5_8delCCCC;167_442del |
| 41 | human | 79844 | ZDHHC11 | zinc finger DHHC-type conta... | XM_017009874.2 | 39.4% | 39.2% | 0_1ins639;146_421del |
| 42 | human | 79844 | ZDHHC11 | zinc finger DHHC-type conta... | XM_017009876.2 | 39.4% | 39.2% | 0_1ins639;146_421del |
| 43 | human | 79844 | ZDHHC11 | zinc finger DHHC-type conta... | XM_017009877.1 | 39.4% | 39.2% | 0_1ins639;146_421del |
| 44 | human | 653082 | ZDHHC11B | zinc finger DHHC-type conta... | NR_147096.2 | 26.4% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1302
- ORF length:
- 1236
- Sequence:
-
1 ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag 61 ttggcatgga cacccgctcc gggagccagt gttccgtcac cccagaagcc atactcaata 121 atgaaaagct ggtcttgccg ccccgcatct ccagagtgaa cggctggtcg ttacccctgc 181 actacttcca ggtggtgacc tgggctgtct tcgtgggcct ttcctcggcc accttcggga 241 tcttcattcc cttcctgcct cacgcgtgga aatacattgc ctacgtggtg accgggggga 301 tcttctcgtt ccacctcgtc gtccacctga tcgcgtcctg catcgacccg gccgactcca 361 atgtcagact catgaagaac tattctcagc ccatgcccct cttcgacaga tcaaaacatg 421 cacacgtgat ccagaatcag ttctgccacc tgtgcaaggt caccgtgaac aagaaaacca 481 aacactgcat ttcctgcaat aagtgtgtgt ccggcttcga ccaccactgc aaatggatca 541 acaactgcgt gggaagccgg aattattggt tcttcttcag cactgtggcc tcggccacag 601 ctggcatgct ctgcctgatc gccatcctgc tgtatgtcct cgtccagtac ctcgtgaacc 661 ccggggtgct ccgcacggac cccaggtatg aagatgtcaa gaatatgaac acgtggctgc 721 tgttcctccc cctgttcccg gtgcaggtgc agaccctgat agtcgtgatc atcgggatgc 781 tcgtgctcct gctggacttt cttggcttgg tgcacctggg ccagctgctc atcttccaca 841 tctacctgaa ggccaagaag atgaccacct ttgagtatct cattaataac cgcaaagaag 901 agagttcaaa acatcaagca gtgaggaaag atccatacgt gcaaatggac aaaggagttc 961 tccagcaagg agctggcgcc ctgggctcat ctgcacaggg agtcaaagcc aagagctccc 1021 tgctgattca caagcactta tgtcacttct gcacttcagt aaaccaggat ggggattcga 1081 cggcacggga aggggatgaa gacccgtgtc catctgcact tggagccaag gccaggaact 1141 cccggctgat ttgcaggcgc ctgtgtcagt tctccactcg tgtacaccca gacgggggct 1201 cgatggcaca ggaagcagat gatgccccga gtatatctac acttgggctg caacaagaaa 1261 caacagagcc catgaaaact gacagtgctg aaagtgaaga ctgcccaact ttcttgtaca 1321 aagtggttgg taagcctatc cctaaccctc tcctcggtct cgattctacg tagtaatgag 1381 ctagcgctaa ccggtggcgc gttaagtcga caatcaacct ctggatta