Construct: ORF ccsbBroad304_04377

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF002937.1_s304c1, BRDN0000407015
Derived from:
ccsbBroadEn_04377
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
SARNP (84324)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_04377
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 84324 SARNP SAP domain containing ribon... NM_033082.4 100% 100%
2 human 84324 SARNP SAP domain containing ribon... NR_026723.1 52.7% 1_55del;686_1195del
3 human 84324 SARNP SAP domain containing ribon... NR_026722.1 48.7% 1_55del;190_191ins47;639_1148del
4 mouse 66118 Sarnp SAP domain containing ribon... NM_025364.2 89.5% 95.7% (many diffs)
5 mouse 66118 Sarnp SAP domain containing ribon... XM_006513949.3 89.2% 95.2% (many diffs)
6 mouse 66118 Sarnp SAP domain containing ribon... XM_006513950.3 79.6% 84.7% (many diffs)
7 mouse 66118 Sarnp SAP domain containing ribon... XM_006513951.3 79.3% 84.2% (many diffs)
8 mouse 66118 Sarnp SAP domain containing ribon... XM_011243523.2 53.9% 58.5% (many diffs)
9 mouse 66118 Sarnp SAP domain containing ribon... XM_011243524.2 53.9% 58.5% (many diffs)
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Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
696
ORF length:
630
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatggc gaccgagacg gtggagctcc ataagctaaa gcttgccgaa ctaaagcaag
121aatgtcttgc tcgtggtttg gagaccaagg gaataaagca agatcttatc cacagactcc
181aggcatatct tgaagaacat gctgaagagg aggcaaatga agaagatgta ctgggagatg
241aaacagagga agaagaaaca aagcccattg agctccctgt caaagaggaa gaaccccctg
301aaaaaactgt tgatgtggca gcagagaaga aagtggtgaa aattacatct gaaataccac
361agactgagag aatgcagaag agggctgaac gattcaatgt acctgtgagc ttggagagta
421agaaagctgc tcgggcagct aggtttggga tttcttcagt tccaacaaaa ggtctgtcat
481ctgataacaa acctatggtt aacttggata agctgaagga aagagctcaa agatttggtt
541tgaatgtctc ttcaatctcc agaaagtctg aagatgatga gaaactgaaa aagaggaagg
601agcgatttgg gattgtcaca agttcagctg gaactggaac cacagaggat acagaggcaa
661agaagaggaa aagagcagag cgctttggga ttgcctgccc aactttcttg tacaaagtgg
721ttggtaagcc tatccctaac cctctcctcg gtctcgattc tacgtagtaa tgagctagcg
781ctaaccggtg gcgcgttaag tcgacaatca acctctggat ta

Download FASTA (ORF) (Full)