Transcript: Human NR_026723.1

Homo sapiens SAP domain containing ribonucleoprotein (SARNP), transcript variant 2, non-coding RNA.

Source:
NCBI, updated 2019-02-06
Taxon:
Homo sapiens (human)
Gene:
SARNP (84324)
Length:
1195
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
NR_026723.1
NBCI Gene record:
SARNP (84324)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NR_026723.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000153584 GCTAAAGCTTGCCGAACTAAA pLKO.1 85 3UTR 100% 13.200 18.480 N SARNP n/a
2 TRCN0000239933 AGAGGGCTGAACGATTCAATG pLKO_005 369 3UTR 100% 10.800 15.120 N Gm6563 n/a
3 TRCN0000420787 AGGGAATAAAGCAAGATCTTA pLKO_005 138 3UTR 100% 5.625 7.875 N SARNP n/a
4 TRCN0000120011 GCTGAACGATTCAATGTACCT pLKO.1 374 3UTR 100% 2.640 3.696 N Sarnp n/a
5 TRCN0000152985 GCTGAACGATTCAATGTACCT pLKO.1 374 3UTR 100% 2.640 3.696 N SARNP n/a
6 TRCN0000345385 GCTGAACGATTCAATGTACCT pLKO_005 374 3UTR 100% 2.640 3.696 N Sarnp n/a
7 TRCN0000151955 CCTTCTTCTTGGTCACATATA pLKO.1 736 3UTR 100% 13.200 9.240 N SARNP n/a
8 TRCN0000432348 TGATAACAAACCTATGGTTAA pLKO_005 472 3UTR 100% 10.800 7.560 N SARNP n/a
9 TRCN0000436379 AGAATGTCTTGCTCGTGGTTT pLKO_005 109 3UTR 100% 4.950 3.465 N SARNP n/a
10 TRCN0000152507 GAAGATGTACTGGGAGATGAA pLKO.1 212 3UTR 100% 4.950 3.465 N SARNP n/a
11 TRCN0000151631 GCATATCTTGAAGAACATGCT pLKO.1 173 3UTR 100% 2.640 1.848 N SARNP n/a
12 TRCN0000154161 CCTGATACTTTCTGTTCTCCA pLKO.1 698 3UTR 100% 2.640 1.584 N SARNP n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NR_026723.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_04377 pDONR223 100% 52.7% None 1_55del;686_1195del n/a
2 ccsbBroad304_04377 pLX_304 0% 52.7% V5 1_55del;686_1195del n/a
3 TRCN0000471172 TTGGGTTGGATTCACCACCTGCCA pLX_317 72.7% 52.7% V5 1_55del;686_1195del n/a
4 ccsbBroadEn_12810 pDONR223 100% 37.8% None (many diffs) n/a
5 ccsbBroad304_12810 pLX_304 0% 37.8% V5 (many diffs) n/a
6 TRCN0000471746 TTGAATTCCGTTTATATTACAGAT pLX_317 39.8% 37.8% V5 (many diffs) n/a
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