Construct: ORF ccsbBroad304_04486

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF002287.1_s304c1, BRDN0000407098
Derived from:
ccsbBroadEn_04486
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
DNAJC5B (85479)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_04486
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 85479 DNAJC5B DnaJ heat shock protein fam... NM_001349432.1 100% 100%
2 human 85479 DNAJC5B DnaJ heat shock protein fam... NM_033105.6 100% 100%
3 human 85479 DNAJC5B DnaJ heat shock protein fam... XM_011517619.2 86.9% 82.8% (many diffs)
4 human 85479 DNAJC5B DnaJ heat shock protein fam... XM_011517620.2 86.9% 85.9% (many diffs)
5 human 85479 DNAJC5B DnaJ heat shock protein fam... XM_011517621.2 82.3% 78.4% (many diffs)
6 human 85479 DNAJC5B DnaJ heat shock protein fam... NR_146171.2 15.6% (many diffs)
7 mouse 66326 Dnajc5b DnaJ heat shock protein fam... NM_001163536.1 89.6% 88.9% (many diffs)
8 mouse 66326 Dnajc5b DnaJ heat shock protein fam... NM_001163537.1 89.6% 88.9% (many diffs)
9 mouse 66326 Dnajc5b DnaJ heat shock protein fam... NM_025489.3 89.6% 88.9% (many diffs)
10 mouse 66326 Dnajc5b DnaJ heat shock protein fam... XM_006535515.1 89.6% 88.9% (many diffs)
11 mouse 66326 Dnajc5b DnaJ heat shock protein fam... XM_006535516.1 89.6% 88.9% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
663
ORF length:
597
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatggc atgtaacata cctaaccaaa gacagcggac tctgtcaaca acaggagaag
121ctctatacga aattcttggt ctgcataagg gagcatcaaa tgaagaaatt aagaaaacct
181acagaaaatt ggccctgaaa caccatccag acaagaatcc agatgatcca gctgctactg
241agaagtttaa agaaatcaac aacgcccacg caatacttac cgacatttca aagagaagca
301tatacgacaa gtacggatcg ctgggactct acgtggccga gcagtttgga gacgaaaacg
361ttaacaccta cttcatgctg tcgagctggt gggcaaaggc cctgtttgtc atcgttggcc
421tcttgacggg ctgctacttt tgctgctgcc tgtgctgctg ctgcaactgc tgctgtggac
481actgccggcc cgagtcatca gtgccagaag aggacttcta tgtgtcccca gaggatctgg
541aggagcagat caagtctgac atggaaaaag atgtggactt tccagttttt ctccagccta
601caaatgcaaa tgagaaaaca cagctaatca aagaaggatc tcgaagttat tgcacagact
661cttgcccaac tttcttgtac aaagtggttg gtaagcctat ccctaaccct ctcctcggtc
721tcgattctac gtagtaatga gctagcgcta accggtggcg cgttaagtcg acaatcaacc
781tctggatta

Download FASTA (ORF) (Full)