Construct: ORF ccsbBroad304_04578

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF001920.1_s304c1, BRDN0000406164
Derived from:
ccsbBroadEn_04578
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
SPSB4 (92369)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_04578
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 92369 SPSB4 splA/ryanodine receptor dom... NM_080862.3 100% 100%
2 human 92369 SPSB4 splA/ryanodine receptor dom... XM_017007509.2 84.4% 84.6% 695_698delAAAA;699_700ins124
3 human 92369 SPSB4 splA/ryanodine receptor dom... XR_924216.3 32.7% 1_215del;910_1028del;1154_2498del
4 human 92369 SPSB4 splA/ryanodine receptor dom... XR_924215.3 12.8% (many diffs)
5 mouse 211949 Spsb4 splA/ryanodine receptor dom... NM_145134.3 88% 97.8% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
885
ORF length:
819
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatggg ccagaagctc tcggggagcc tcaagtcagt ggaggtgcga gagccggcgc
121tgcggccggc caagcgggag ctgcggggtg cagagcccgg gcggccggcg cggctggacc
181agctgttgga catgccagcg gcggggctgg ctgtgcagct gcggcacgcg tggaaccccg
241aggaccgctc gctcaacgtc ttcgtcaagg acgacgaccg gctcaccttc caccggcacc
301ccgtggccca gagcaccgac ggcatccgcg gcaaggtggg ccacgcccgc ggcctgcacg
361cctggcagat caactggccg gctcggcagc gcggcaccca cgctgtagtt ggtgtggcca
421cggcccgtgc tcccctgcac tccgtgggct acacggcgct ggtaggcagt gacgccgagt
481cgtggggctg ggacctgggc cgcagccgcc tctaccacga cggcaagaac cagcccggcg
541tggcctaccc ggcctttctg gggcccgacg aggcctttgc gctgcccgac tcgctgctcg
601tggtgctgga catggatgag ggcacactca gcttcatcgt ggatggccag tacctgggcg
661tggccttccg aggtctcaag ggcaagaagc tgtacccggt ggtgagtgcc gtgtggggcc
721actgtgaagt caccatgcgc tacatcaacg gccttgaccc cgagcccctg ccactgatgg
781acctgtgccg gagatccatc cgctcggccc tgggccgcca gcgcctgcag gacatcagct
841ccctgcccct gcctcagtct ctcaaaaact atctgcagta ccagtgccca actttcttgt
901acaaagtggt tggtaagcct atccctaacc ctctcctcgg tctcgattct acgtagtaat
961gagctagcgc taaccggtgg cgcgttaagt cgacaatcaa cctctggatt a

Download FASTA (ORF) (Full)