Construct: ORF ccsbBroad304_04590

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF012999.1_s304c1, BRDN0000399120
Derived from:
ccsbBroadEn_04590
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
SLC38A5 (92745)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_04590
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 92745 SLC38A5 solute carrier family 38 me... NM_033518.4 100% 100%
2 human 92745 SLC38A5 solute carrier family 38 me... XM_017029961.2 100% 100%
3 human 92745 SLC38A5 solute carrier family 38 me... XM_017029960.1 98.7% 98.7% 1_18del
4 human 92745 SLC38A5 solute carrier family 38 me... XM_005272695.4 90.9% 90.9% 1_141del
5 human 92745 SLC38A5 solute carrier family 38 me... XM_005272698.5 90% 88.1% (many diffs)
6 human 92745 SLC38A5 solute carrier family 38 me... XM_006724569.3 90% 88.1% (many diffs)
7 human 92745 SLC38A5 solute carrier family 38 me... XM_005272697.2 88.9% 87.1% (many diffs)
8 human 92745 SLC38A5 solute carrier family 38 me... XM_005272694.3 82.3% 80.5% (many diffs)
9 mouse 209837 Slc38a5 solute carrier family 38, m... NM_172479.3 84.6% 85.6% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1482
ORF length:
1416
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatgga actgcaggat ccaaagatga atggagccct cccttcggat gctgtgggct
121acaggcaaga acgtgagggc ttcctgccca gtcgtggtcc tgctcctggg agcaagccgg
181tccagttcat ggatttcgag gggaagacat cgtttggaat gtcagtgttc aacctcagca
241acgccatcat gggcagcggc atcctggggc tggcctatgc catggcccac acgggggtca
301tcttcttcct ggccctgctg ctgtgcattg cgcttctgtc gtcctactcc atccacctcc
361tgctgacctg tgctggtatt gcaggcatcc gagcctatga gcagctggga cagagggcat
421tcgggcctgc ggggaaggta gtggtggcca cagtcatctg tctgcacaat gttggggcca
481tgtccagtta cctgttcatc atcaaatctg agctccccct ggttatcggc accttcctgt
541acatggaccc cgagggggac tggttcttga agggaaacct cctcatcatc atcgtcagtg
601tgttaatcat cctgcccctc gccctcatga aacacttggg ctacctgggg tacaccagtg
661gtctctctct gacctgcatg ctgtttttcc ttgtttcggt catctacaag aagttccaac
721ttggctgtgc tataggccac aatgaaacag caatggagag tgaagctctc gtgggactcc
781ccagccaagg actcaacagc agctgtgagg cccagatgtt cacagttgac tcacagatgt
841cctacacagt gcccattatg gcttttgctt ttgtctgcca ccctgaggtg ctgcccatct
901atacggagct ctgccggccc tccaagcgca ggatgcaggc cgtggccaac gtgtccattg
961gggccatgtt ctgcatgtat gggctcacag caacctttgg atacctcacc ttctacagca
1021gtgtgaaggc ggagatgctg cacatgtaca gccagaagga cccgctcatc ctctgtgtgc
1081gcctggccgt gctgctcgcg gtgaccctca ctgtgccagt cgtgctgttc cctatccgcc
1141gggccctgca gcagctgctt ttcccaggca aggccttcag ctggccacga catgtggcca
1201tagctctgat cctgcttgtt ttggtcaatg tccttgtcat ctgtgtgcca accatccggg
1261atatctttgg agttatcggg tccacctcag cccccagcct catcttcatc ctccccagca
1321tcttctacct ccgcattgta ccctctgagg tggagccttt cttatcctgg cccaagatcc
1381aggccctgtg ctttggagtc ctgggagtcc tcttcatggc cgtcagtcta ggctttatgt
1441ttgccaactg ggccacaggc cagagccgca tgtctggaca ctgcccaact ttcttgtaca
1501aagtggttgg taagcctatc cctaaccctc tcctcggtct cgattctacg tagtaatgag
1561ctagcgctaa ccggtggcgc gttaagtcga caatcaacct ctggatta

Download FASTA (ORF) (Full)