Construct: ORF ccsbBroad304_04618

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF007044.1_s304c1, BRDN0000401981
Derived from:
ccsbBroadEn_04618
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
SYTL5 (94122)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_04618
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 94122 SYTL5 synaptotagmin like 5 NM_001163334.1 100% 100%
2 human 94122 SYTL5 synaptotagmin like 5 XM_011544001.2 100% 100%
3 human 94122 SYTL5 synaptotagmin like 5 XM_011544002.2 100% 100%
4 human 94122 SYTL5 synaptotagmin like 5 XM_017029972.1 100% 100%
5 human 94122 SYTL5 synaptotagmin like 5 XM_017029973.1 100% 100%
6 human 94122 SYTL5 synaptotagmin like 5 XM_017029974.1 100% 100%
7 human 94122 SYTL5 synaptotagmin like 5 NM_001163335.2 97% 97% 1152_1153ins66
8 human 94122 SYTL5 synaptotagmin like 5 NM_138780.3 97% 97% 1152_1153ins66
9 mouse 236643 Sytl5 synaptotagmin-like 5 NM_177704.3 85.9% 84.2% (many diffs)
10 mouse 236643 Sytl5 synaptotagmin-like 5 XM_006527604.3 85.9% 84.2% (many diffs)
11 mouse 236643 Sytl5 synaptotagmin-like 5 XM_006527607.3 85.9% 84.2% (many diffs)
12 mouse 236643 Sytl5 synaptotagmin-like 5 XM_006527608.3 85.9% 84.2% (many diffs)
13 mouse 236643 Sytl5 synaptotagmin-like 5 XM_011247460.2 85.9% 84.2% (many diffs)
14 mouse 236643 Sytl5 synaptotagmin-like 5 XM_011247463.2 85.9% 84.2% (many diffs)
15 mouse 236643 Sytl5 synaptotagmin-like 5 XM_011247464.1 85.9% 84.2% (many diffs)
16 mouse 236643 Sytl5 synaptotagmin-like 5 XM_011247465.1 85.9% 84.2% (many diffs)
17 mouse 236643 Sytl5 synaptotagmin-like 5 XM_011247468.1 85.9% 84.2% (many diffs)
18 mouse 236643 Sytl5 synaptotagmin-like 5 XM_011247469.2 85.9% 84.2% (many diffs)
19 mouse 236643 Sytl5 synaptotagmin-like 5 XM_011247470.2 85.9% 84.2% (many diffs)
20 mouse 236643 Sytl5 synaptotagmin-like 5 XM_011247471.2 85.9% 84.2% (many diffs)
21 mouse 236643 Sytl5 synaptotagmin-like 5 XM_017318467.1 85.9% 84.2% (many diffs)
22 mouse 236643 Sytl5 synaptotagmin-like 5 XM_011247472.1 85.6% 83.9% (many diffs)
23 mouse 236643 Sytl5 synaptotagmin-like 5 NM_001290728.1 83.4% 81.6% (many diffs)
24 mouse 236643 Sytl5 synaptotagmin-like 5 XM_011247473.1 83.4% 81.6% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
2325
ORF length:
2256
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcaccat gtctaagaac tcagagttca tcaatctgtc atttttatta gatcatgaga
121aggaaatgat cctgggcgtc ctaaagagag atgaatattt gaaaaaagtg gaggacaaga
181gaataaggaa gctgaaaaat gaactcttag aagcaaaacg tagaagtggg aaaactcaac
241aagaggccag cagagtttgt gttcactgtc acagaaacct gggcctaatc tttgaccggg
301gagacccttg tcaggcttgc tcactgaggg tatgcaggga gtgtcgagtt gcaggcccca
361atggcagctg gaagtgcact gtctgtgaca aaatcgcgca gctaaggatt ataactggtg
421agtggttttt tgaagaaaag gcaaaacgtt tcaagcaagt caatgttctc ggcactgatg
481ttgtccgaca gtccatttta agaagaagtc caggagctga agaagtacag agccaagagc
541aaacccgcca ggatgcagaa aagtcagaca cttcacctgt tgctgggaag aaggccagcc
601atgatgggcc caagagaaag ggatttcttc ttagcaagtt cagatcggca accagaggag
661aaatcataac tcccaaaact gacactgggc ggagctatag cttggactta gacggtcaac
721attttcggag tttaaaatca cctcctggtt cagacagggg aagcactggc tcatcagatc
781tcaatgacca ggaacctggt cctaggaccc cgaagagcag tcggagcaat ggtgtgaccc
841caggcactca gagttcacca gccccaagca cacgaactgt gacctcagtc atcagtagag
901agtatggttt tgaaaattcc atggatttgg ctgctattga aggtacctct caggagctca
961caaagagtca ccgcagaaac acttctggca caccttccat agcagtgtct ggaacctctc
1021tctcctcaga tcagagtcga tctgagttag atttgagtga gtcatttaca gaagactcag
1081aggatactgt aagcataaga agcaagtctg tccctggggc tttagacaag gactccttgg
1141aagagactga agaaagcatt gatgccttag tgtcctcgca gttatctaca aacactcacc
1201gtctggcaag tggcctatca actagttctc aagcaggttc tgacaggaag tggacctacc
1261taaatgtgcc tgatgctgac tcagacacta ccagccttaa cagcatgatg agcgtttaca
1321gtgaaacggg agactatggc aacgtgaaag tcagtggtga aatccttctc catatcagct
1381actgctacaa aactggtggg ctgtacattt ttgtcaagaa ttgcagaaat ctggccatag
1441gagatgaaaa gaaacagagg acagatgctt atgtcaagtc atatcttctt cctgacaagt
1501cccggaacaa caagcgtaag accaaaatca gaacaggcac caatccagaa ttcaatgaaa
1561cactaaagta cactatcagc catacccagc tggaaacaag aactctgcag ctctcagtct
1621ggcactatga tcgatttgga cgtaatagct tcctcgggga agtagagatt ccttttgact
1681catggaactt tgaaaatcca actgatgagt ggtttgtgct tcaacccaag gtggagtttg
1741ctcctgatat tggccttcaa tacaaaggag agctgacagt tgttttacgt tacattcccc
1801cagaagagaa cctgatgctt ccaccagaac aactccaagg aaataagact tttaaaaagg
1861gaaagaagaa ggagtcacct gtaatctctg gaggaatact agaagtgttc atcaaagagg
1921caaagaattt gacagcagtg aagtcaggag gcacttctga tagctttgtg aagggctacc
1981tgctccctga tgatagcaaa gccaccaagc acaaaactct ggtaataaaa aagagtgtta
2041accctcagtg gaatcataca ttcatgttca gtggcatcca tccccaggat ataaagaatg
2101tttgcctaga acttactatc tgggacaagg aggccttttc cagcaacatc tttctgggag
2161gagttcgttt gaattctgga agtggtgtga gccatgggaa gaacgtggat tggatggact
2221ctcaggggga agagcagcgc ctttggcaga agatggccaa caaccctgga actccctttg
2281agggtgtact catgcttcgt tccagcatgg gaaaatgtag gctcttgcca actttcttgt
2341acaaagtggt tggtaagcct atccctaacc ctctcctcgg tctcgattct acgtagtaat
2401gagctagcgc taaccggtgg cgcgttaagt cgacaatcaa cctctggatt a

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