Construct: ORF ccsbBroad304_04832

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF000609.1_s304c1, BRDN0000401576
Derived from:
ccsbBroadEn_04832
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
SYT2 (127833)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_04832
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 127833 SYT2 synaptotagmin 2 NM_001136504.1 100% 100%
2 human 127833 SYT2 synaptotagmin 2 NM_177402.5 100% 100%
3 human 127833 SYT2 synaptotagmin 2 XM_017000313.1 100% 100%
4 human 127833 SYT2 synaptotagmin 2 XM_011509192.2 99.2% 99.2% 343_351delCAGCTCCCA
5 human 127833 SYT2 synaptotagmin 2 XM_017000311.2 99.2% 99.2% 343_351delCAGCTCCCA
6 human 127833 SYT2 synaptotagmin 2 XM_017000312.1 99.2% 99.2% 343_351delCAGCTCCCA
7 human 127833 SYT2 synaptotagmin 2 XM_017000310.2 88% 88% 1_171del
8 human 127833 SYT2 synaptotagmin 2 XM_017000309.2 87.4% 87.4% 1_171del;514_522delCAGCTCCCA
9 mouse 20980 Syt2 synaptotagmin II NM_009307.3 88.7% 97.6% (many diffs)
10 mouse 20980 Syt2 synaptotagmin II XM_006529322.1 88.7% 97.6% (many diffs)
11 mouse 20980 Syt2 synaptotagmin II XM_006529323.3 88.7% 97.6% (many diffs)
12 mouse 20980 Syt2 synaptotagmin II XM_006529324.3 52.9% 59.4% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
1326
ORF length:
1257
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcaccat gaggaacatt ttcaagagga accaggagcc tattgtggct cctgccacca
121ccaccgccac gatgcccatt ggacccgtgg acaactccac tgagagtggg ggtgctgggg
181agagccagga ggacatgttt gccaaactga aggagaagtt attcaatgag ataaacaaga
241ttcccttacc accctgggca ctgatcgcca ttgctgtggt tgctgggctc ctgcttctca
301cctgctgctt ctgcatctgc aagaaatgct gctgcaagaa gaagaagaac aagaaggaga
361agggcaaagg catgaagaat gccatgaaca tgaaggacat gaaagggggt caggatgacg
421acgacgcaga gacaggcctg actgaggggg aaggtgaagg ggaggaggag aaagagccag
481agaacctggg caaactgcag ttttccctgg actatgattt tcaggctaat cagcttactg
541tgggcgttct gcaggctgct gaactgcctg ccctggacat gggaggcacc tcagaccctt
601atgtcaaggt cttcctcctt cctgacaaga agaagaaata tgagaccaaa gtccatcgga
661agacactgaa ccctgccttc aatgaaacct tcaccttcaa ggtgccatac caggagcttg
721ggggcaaaac tctggtgatg gccatctatg actttgaccg cttctccaaa catgacatca
781ttggagaggt aaaggtgcct atgaacacag tggacctcgg ccagcccatt gaggagtgga
841gagacctgca aggcggggaa aaggaggagc cggagaagct gggcgacatc tgcacctccc
901tgcgctatgt gcccacggcc gggaagctca ctgtctgcat cctggaggct aagaacctca
961agaagatgga cgtgggcggc ctttcagacc cgtacgtgaa gatccacctg atgcagaatg
1021gcaagaggct caagaagaag aagacaaccg tgaagaagaa gaccctgaac ccatacttca
1081acgagtcctt cagctttgag atccccttcg agcagattca gaaagtccag gtagtggtca
1141ccgtgctgga ctatgacaag ctgggcaaga acgaagccat aggcaagatc ttcgtgggca
1201gcaatgccac gggcacagag ctgcggcact ggtccgacat gctggccaac ccccggaggc
1261ccatcgccca gtggcactcg ctcaagcctg aggaggaggt ggatgcactc ctgggcaaga
1321acaagttgcc aactttcttg tacaaagtgg ttggtaagcc tatccctaac cctctcctcg
1381gtctcgattc tacgtagtaa tgagctagcg ctaaccggtg gcgcgttaag tcgacaatca
1441acctctggat ta

Download FASTA (ORF) (Full)