Construct: ORF ccsbBroad304_05068

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF000790.1_s304c1, BRDN0000411265
Derived from:
ccsbBroadEn_05068
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
FAM53A (152877)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_05068
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 152877 FAM53A family with sequence simila... NM_001013622.3 100% 100%
2 human 152877 FAM53A family with sequence simila... NM_001174070.2 100% 100%
3 human 152877 FAM53A family with sequence simila... XM_005247948.3 100% 100%
4 human 152877 FAM53A family with sequence simila... XM_011513402.2 100% 100%
5 human 152877 FAM53A family with sequence simila... XM_011513403.1 78.2% 74.7% (many diffs)
6 human 152877 FAM53A family with sequence simila... XM_024453912.1 78.2% 74.7% (many diffs)
7 human 152877 FAM53A family with sequence simila... XM_011513404.2 76.3% 74.1% (many diffs)
8 human 152877 FAM53A family with sequence simila... XM_011513405.1 74.5% 74.3% (many diffs)
9 human 152877 FAM53A family with sequence simila... NM_001297435.1 68.6% 76.4% 881_1034del;1080_1081ins268
10 human 152877 FAM53A family with sequence simila... XM_017007802.1 68.6% 76.4% 881_1034del;1080_1081ins268
11 human 152877 FAM53A family with sequence simila... XR_924913.3 42.6% 1_895del;2090_2800del
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
65
ORF end:
1259
ORF length:
1194
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61tggcatggtc acactcatca ctgagaagct gcagagccag agcctggacg acctcacctg
121caaggcggag gctggcccgt tgcagtattc tgcggaaacc ctgaacaaga gcggtcgtct
181gttccctttg gagctcaacg accagagtcc ctggaaggtc ttcagtggag gaccgcccgt
241cagaagccag gcagccacgg gccctgattt ctccttcctg ccgggcctgt ctgctgccgc
301tcacaccatg ggtcttcagt ggcagccaca gtccccgcgc ccaggcgcag gcctgggtgc
361agccagcacc gtggacccca gtgaaagcac aggctcgtcc acggccccac cgaccaagcg
421gcattgccgg tccttgtcag aacccgagga gcttgtgcgc tgccggtccc cctggcgccc
481cggcagctcc aaggtctgga ctccagtctc caagaggcgg tgcgacagcg gcgggagtgc
541cacgcggcag ggaagccccg gcgccgtcct gccgaggagt gctgtgtggt cgaccggtcc
601cacctcgccc gccacgcccc ggccgtcctc cgccagcggc ggcttcgtgg acagcagcga
661gggcagtgcg ggctcaggcc cgctctggtg ttccgcggag tcctgcttgc cctccacgag
721gcgccgcccg tccctctcac aggagcgact cgcgggtgcg ggcactcccc tgccctgggc
781cagcagcagc cccacgtcca cgcctgcgct gggcgggcgc cgtgggctgc tccggtgccg
841ctcacagcct tgcgtgctca gtgggaagag gagccggcgc aaacggaggc gtgaggagga
901cgccaggtgg acacgcccat ccttggactt cctgaaaatg acccagactt taaaaaattc
961aaaaagcctt tgctccctca attacgaaga tgacgatgag gatgacaccc cagtgaagac
1021ggttctgtcc tccccatgtg actcccgggg cctccctggc atcaccatgc ctggctgcag
1081ccagaggggc ctcaggacca gccctgtcca ccccaacctg tgggcctcta gggagtcggt
1141gaccagtgat ggctcccgca ggagcagcgg ggacccccgt gatggggaca gtgtcgggga
1201ggagggcgtc ttcccccggg cccgctggga gctggacctg gagcagatcg agaacaactg
1261cccaactttc ttgtacaaag tggttggtaa gcctatccct aaccctctcc tcggtctcga
1321ttctacgtag taatgagcta gcgctaaccg gtggcgcgtt aagtcgacaa tcaacctctg
1381gatta

Download FASTA (ORF) (Full)