Construct: ORF ccsbBroad304_05185

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF000796.1_s304c1, BRDN0000460346
Derived from:
ccsbBroadEn_05185
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
FAM209A (200232)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_05185
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 200232 FAM209A family with sequence simila... NM_001012971.3 100% 100%
2 human 388799 FAM209B family with sequence simila... NM_001013646.4 92.9% 87.7% (many diffs)
3 human 388799 FAM209B family with sequence simila... XM_017027849.1 66.5% 62.7% (many diffs)
4 human 200232 FAM209A family with sequence simila... XR_001754199.1 53.9% 1_45del;559_951del
5 human 388799 FAM209B family with sequence simila... XR_001754273.1 20.9% (many diffs)
6 human 388799 FAM209B family with sequence simila... XR_001754272.1 19.2% (many diffs)
7 human 388799 FAM209B family with sequence simila... XR_001754271.1 15.5% (many diffs)
8 human 388799 FAM209B family with sequence simila... XR_001754270.1 12.3% (many diffs)
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Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
582
ORF length:
513
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcaccat gtggacgctg aaatcgtccc tggtcctgct tctgtgcctc acctgcagct
121atgcctttat gttctcttct ctgagacaga aaactagcga accccagggg aaggtgcaat
181acggagagca ctttcggatt cggcagaatc taccagagca cacccaaggc tggcttggga
241gcaaatggct ctggcttctt tttgttgttg tgccgtttgt gatactgcag tgtcaaagag
301acagtgagaa gaataaggag cagagtcctc ctggccttcg aggcggccaa cttcactctc
361cattaaagaa aaaaagaaat gcttccccca acaaagactg tgcattcaat accttaatgg
421aactcgaggt ggagcttatg aaatttgtgt ccaaagtgcg gaatcttaaa cgtgccatgg
481caacaggtag tggcagtaac ctcaggcttc gaaagtcaga gatgcctgca gatccatacc
541atgtcacgat ctgtgaaata tggggagaag aaagctctag cttgccaact ttcttgtaca
601aagtggttgg taagcctatc cctaaccctc tcctcggtct cgattctacg tagtaatgag
661ctagcgctaa ccggtggcgc gttaagtcga caatcaacct ctggatta

Download FASTA (ORF) (Full)