Construct: ORF ccsbBroad304_05882

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF008308.1_s304c1, BRDN0000462060
Derived from:
ccsbBroadEn_05882
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
BCL6 (604)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_05882
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 604 BCL6 BCL6 transcription repressor NM_001130845.2 99.9% 99.8% 478C>T;1161C>T
2 human 604 BCL6 BCL6 transcription repressor NM_001706.5 99.9% 99.8% 478C>T;1161C>T
3 human 604 BCL6 BCL6 transcription repressor XM_005247694.4 99.9% 99.8% 478C>T;1161C>T
4 human 604 BCL6 BCL6 transcription repressor NM_001134738.1 91.9% 91.9% 478C>T;1161C>T;1539_1540ins168
5 human 604 BCL6 BCL6 transcription repressor XM_011513062.3 91.9% 91.9% 478C>T;1161C>T;1539_1540ins168
6 mouse 12053 Bcl6 B cell leukemia/lymphoma 6 NM_001348026.1 89% 94.4% (many diffs)
7 mouse 12053 Bcl6 B cell leukemia/lymphoma 6 NM_009744.4 89% 94.4% (many diffs)
8 mouse 12053 Bcl6 B cell leukemia/lymphoma 6 XM_017316855.1 89% 94.4% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
2187
ORF length:
2118
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcaccat ggcctcgccg gctgacagct gtatccagtt cacccgccat gccagtgatg
121ttcttctcaa ccttaatcgt ctccggagtc gagacatctt gactgatgtt gtcattgttg
181tgagccgtga gcagtttaga gcccataaaa cggtcctcat ggcctgcagt ggcctgttct
241atagcatctt tacagaccag ttgaaatgca accttagtgt gatcaatcta gatcctgaga
301tcaaccctga gggattctgc atcctcctgg acttcatgta cacatctcgg ctcaatttgc
361gggagggcaa catcatggct gtgatggcca cggctatgta cctgcagatg gagcatgttg
421tggacacttg ccggaagttt attaaggcca gtgaagcaga gatggtttct gccatcaagc
481ctcctcgtga agagttcctc aacagccgga tgctgatgcc ccaagacatc atggcctatc
541ggggttgtga ggtggtggag aacaacctgc cactgaggag cgcccctggg tgtgagagca
601gagcctttgc ccccagcctg tacagtggcc tgtccacacc gccagcctct tattccatgt
661acagccacct ccctgtcagc agcctcctct tctccgatga ggagtttcgg gatgtccgga
721tgcctgtggc caaccccttc cccaaggagc gggcactccc atgtgatagt gccaggccag
781tccctggtga gtacagccgg ccgactttgg aggtgtcccc caatgtgtgc cacagcaata
841tctattcacc caaggaaaca atcccagaag aggcacgaag tgatatgcac tacagtgtgg
901ctgagggcct caaacctgct gccccctcag cccgaaatgc cccctacttc ccttgtgaca
961aggccagcaa agaagaagag agaccctcct cggaagatga gattgccctg catttcgagc
1021cccccaatgc acccctgaac cggaagggtc tggttagtcc acagagcccc cagaaatctg
1081actgccagcc caactcgccc acagagtcct gcagcagtaa gaatgcctgc atcctccagg
1141cttctggctc ccctccagcc aagagcccca ctgaccccaa agcctgcaac tggaagaaat
1201acaagttcat cgtgctcaac agcctcaatc agaatgccaa accagagggg cctgagcagg
1261ctgagctggg ccgcctttcc ccacgagcct acacggcccc acctgcctgc cagccaccca
1321tggagcctga gaaccttgac ctccagtccc caaccaagct gagtgccagc ggggaggact
1381ccaccatccc acaagccagc cggctcaata acatcgttaa caggtccatg acgggctctc
1441cccgcagcag cagcgagagc cactcaccac tctacatgca ccccccgaag tgcacgtcct
1501gcggctctca gtccccacag catgcagaga tgtgcctcca caccgctggc cccacgttcc
1561ctgaggagat gggagagacc cagtctgagt actcagattc tagctgtgag aacggggcct
1621TCTTCTGCAA TGAGTGTGAC TGCCGCTTCT CTGAGGAGGC CTCACTCAAG AGGCACACGC
1681TGCAGACCCA CAGTGACAAA CCCTACAAGT GTGACCGCTG CCAGGCCTCC TTCCGCTACA
1741AGGGCAACCT CGCCAGCCAC AAGACCGTCC ATACCGGTGA GAAACCCTAT CGTTGCAACA
1801TCTGTGGGGC CCAGTTCAAC CGGCCAGCCA ACCTGAAAAC CCACACTCGA ATTCACTCTG
1861GAGAGAAGCC CTACAAATGC GAAACCTGCG GAGCCAGATT TGTACAGGTG GCCCACCTCC
1921GTGCCCATGT GCTTATCCAC ACTGGTGAGA AGCCCTATCC CTGTGAAATC TGTGGCACCC
1981GTTTCCGGCA CCTTCAGACT CTGAAGAGCC ACCTGCGAAT CCACACAGGA GAGAAACCTT
2041ACCATTGTGA GAAGTGTAAC CTGCATTTCC GTCACAAAAG CCAGCTGCGA CTTCACTTGC
2101GCCAGAAGCA TGGCGCCATC ACCAACACCA AGGTGCAATA CCGCGTGTCA GCCACTGACC
2161TGCCTCCGGA GCTCCCCAAA GCCTGCTTGC CAACTTTCTT GTACaaagtg gttggtaagc
2221ctatccctaa ccctctcctc ggtctcgatt ctacgtagta atgagctagc gctaaccggt
2281ggcgcgttaa gtcgacaatc aacctctgga tta

Download FASTA (ORF) (Full)

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