Construct: ORF ccsbBroad304_06040

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF007697.1_s304c1, BRDN0000410199
Derived from:
ccsbBroadEn_06040
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
CRY1 (1407)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_06040
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 1407 CRY1 cryptochrome circadian regu... NM_004075.5 99.9% 100% 636T>C
2 human 1407 CRY1 cryptochrome circadian regu... XM_017018832.2 93.8% 91.3% (many diffs)
3 human 1407 CRY1 cryptochrome circadian regu... XM_024448844.1 92.6% 87.2% 636T>C;1656_1729del;1833_1896del
4 human 1407 CRY1 cryptochrome circadian regu... XM_024448845.1 86.9% 79.3% (many diffs)
5 mouse 12952 Cry1 cryptochrome 1 (photolyase-... NM_007771.3 86.3% 93.3% (many diffs)
6 mouse 12952 Cry1 cryptochrome 1 (photolyase-... XM_011243348.1 79% 83.7% (many diffs)
7 mouse 12952 Cry1 cryptochrome 1 (photolyase-... XM_011243349.1 62.2% 67.3% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1824
ORF length:
1758
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatggg ggtgaacgcc gtgcactggt tccgaaaggg gctccggctc cacgacaacc
121ccgccctgaa ggagtgcatt cagggcgccg acaccatccg ctgcgtctac atcctggacc
181cctggttcgc cggctcctcc aatgtgggca tcaacaggtg gcgatttttg cttcagtgtc
241ttgaggatct tgatgccaat ctacgaaaat taaactcccg tctgtttgtg attcgtggac
301aaccagcaga tgtgtttccc aggcttttca aggaatggaa cattactaaa ctttcaattg
361agtatgattc tgagcccttt ggaaaggaac gagacgcagc tattaagaaa ctggcaactg
421aagctggagt agaagtcatt gtaagaattt cacatacatt atatgaccta gacaagatca
481tagaactcaa tggtggacaa ccgcctctaa cttataaaag attccagact ctcatcagca
541aaatggaacc actagagata ccagtagaga caattacttc agaagtgata gaaaagtgca
601caactcctct gtctgatgac catgatgaga aatatggagt cccttcactg gaagagctag
661gttttgatac agatggctta tcctctgcag tgtggccagg cggagaaact gaagcactta
721ctcgtttgga aaggcatttg gaaagaaaag cttgggtggc aaattttgaa agacctcgaa
781tgaatgcgaa ttctctgctt gcaagcccta ctggacttag tccttatctc cgatttggtt
841gtttgtcatg tcgactgttt tacttcaaac taacagatct ctacaaaaag gtaaagaaga
901acagttcccc tcccctttcc ctttatgggc aactgttatg gcgtgaattt ttctatacag
961cagcaacaaa taatccacgc tttgataaaa tggaaggaaa ccctatctgt gttcagattc
1021cttgggataa aaatcctgag gctttagcca aatgggcgga aggccggaca ggctttccat
1081ggattgatgc catcatgaca cagcttcgtc aggagggttg gattcatcat ctagccaggc
1141atgcagttgc ttgcttcctG ACACGAGGGG ACCTGTGGAT TAGTTGGGAA GAAGGAATGA
1201AGGTATTTGA AGAATTATTG CTTGATGCAG ATTGGAGCAT AAATGCTGGA AGTTGGATGT
1261GGCTGTCTTG TAGTTCCTTT TTTCAACAGT TTTTTCACTG CTATTGCCCT GTTGGTTTTG
1321GTAGGAGAAC AGATCCCAAT GGAGACTATA TCAGGCGTTA TTTGCCTGTC CTAAGAGGCT
1381TCCCTGCAAA ATATATCTAT GATCCCTGGA ATGCACCAGA AGGTATCCAA AAGGTAGCCA
1441AATGTTTGAT AGGAGTTAAT TATCCTAAAC CAATGGTGAA CCATGCTGAG GCAAGCCGTT
1501TGAATATCGA AAGGATGAAA CAGATCTATC AGCAGCTTTC ACGATATAGA GGACTAGGTC
1561TTCTGGCATC AGTACCTTCT AATCCTAATG GGAATGGAGG CTTCATGGGA TATTCTGCAG
1621AAAATATCCC AGGTTGTAGC AGCAGTGGAA GTTGCTCTCA AGGGAGTGGT ATTTTACACT
1681ATGCTCATGG CGACAGTCAG CAAACTCACC TGTTGAAGCA AGGAAGAAGC TCCATGGGCA
1741CTGGTCTCAG TGGTGGGAAA CGTCCTAGTC AGGAAGAGGA CACACAGAGT ATTGGTCCTA
1801AAGTCCAGAG ACAGAGCACT AATTACCCAA CTTTCTTGTA Caaagtggtt ggtaagccta
1861tccctaaccc tctcctcggt ctcgattcta cgtagtaatg agctagcgct aaccggtggc
1921gcgttaagtc gacaatcaac ctctggatta

Download FASTA (ORF) (Full)