Construct: ORF ccsbBroad304_06068

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF003577.1_s304c1, BRDN0000398976
Derived from:
ccsbBroadEn_06068
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
CXADR (1525)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_06068
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 1525 CXADR CXADR Ig-like cell adhesion... NM_001338.5 99.9% 100% 120A>G
2 human 1525 CXADR CXADR Ig-like cell adhesion... NM_001207066.1 94.6% 93.6% (many diffs)
3 human 1525 CXADR CXADR Ig-like cell adhesion... XM_011529476.2 93.4% 92.8% (many diffs)
4 human 1525 CXADR CXADR Ig-like cell adhesion... XM_011529477.2 70.9% 52.1% (many diffs)
5 human 1525 CXADR CXADR Ig-like cell adhesion... XM_011529478.2 69% 50% (many diffs)
6 human 1525 CXADR CXADR Ig-like cell adhesion... NM_001207063.2 68.9% 51.5% 120A>G;568_569ins262;756_757ins77
7 human 1525 CXADR CXADR Ig-like cell adhesion... XM_011529479.1 68.9% 51.5% 120A>G;568_569ins262;756_757ins77
8 human 440224 CXADRP3 CXADR pseudogene 3 NR_024076.1 65% (many diffs)
9 human 1525 CXADR CXADR Ig-like cell adhesion... NM_001207064.2 54.7% 41.9% 120A>G;414_415ins418;600_601ins77
10 human 646243 CXADRP2 CXADR pseudogene 2 NR_024387.1 42.4% (many diffs)
11 human 1525 CXADR CXADR Ig-like cell adhesion... XR_001754814.1 24.1% (many diffs)
12 human 1525 CXADR CXADR Ig-like cell adhesion... NM_001207065.2 22.6% 21.3% (many diffs)
13 mouse 13052 Cxadr coxsackie virus and adenovi... NM_001025192.3 83.7% 89.8% (many diffs)
14 mouse 13052 Cxadr coxsackie virus and adenovi... XM_006522883.3 83.7% 89.8% (many diffs)
15 mouse 13052 Cxadr coxsackie virus and adenovi... NM_009988.4 78.7% 83.8% (many diffs)
16 mouse 13052 Cxadr coxsackie virus and adenovi... XM_006522884.3 78.7% 83.8% (many diffs)
17 mouse 13052 Cxadr coxsackie virus and adenovi... XM_017316864.1 52.9% 55.6% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1161
ORF length:
1095
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatggc gctcctgctg tgcttcgtgc tcctgtgcgg agtagtggat ttcgccagaa
121gtttgagtat cactactcct gaagagatga ttgaaaaagc caaaggggaa actgcctatc
181tgccgtgcaa atttacgctt agtcccgaag accagggacc gctggacatc gagtggctga
241tatcaccagc tgataatcag aaggtggatc aagtgattat tttatattct ggagacaaaa
301tttatgatga ctactatcca gatctgaaag gccgagtaca ttttacgagt aatgatctca
361aatctggtga tgcatcaata aatgtaacga atttacaact gtcagatatt ggcacatatc
421agtgcaaagt gaaaaaagct cctggtgttg caaataagaa gattcatctg gtagttcttg
481ttaagccttc aggtgcgaga tgttacgttg atggatctga agaaattgga agtgacttta
541agataaaatg tgaaccaaaa gaaggttcac ttccattaca gtatgagtgg caaaaattgt
601ctgactcaca gaaaatgccc acttcatggt tagcagaaat gacttcatct gttatatctg
661taaaaaatgc ctcttctgag tactctggga catacagctg tacagtcaga aacagagtgg
721gctctgatca gtgcctgttg cgtctaaacg ttgtccctcc ttcaaataaa gctggactaa
781ttgcaggagc cattatagga actttgcttg ctctagcgct cattggtctt atcatctttt
841gctgtcgtaa aaagcgcaga gaagaaaaat atgaaaagga agttcatcac gatatcaggg
901aagatgtgcc acctccaaag agccgtacgt ccactgccag aagctacatc ggcagtaatc
961attcatccct ggggtccatg tctccttcca acatggaagg atattccaag actcagtata
1021accaagtacc aagtgaagac tttgaacgca ctcctcagag tccgactctc ccacctgcta
1081aggtagctgc ccctaatcta agtcgaatgg gtgcgattcc tgtgatgatt ccagcacaga
1141gcaaggatgg gtctatagta tacccaactt tcttgtacaa agtggttggt aagcctatcc
1201ctaaccctct cctcggtctc gattctacgt agtaatgagc tagcgctaac cggtggcgcg
1261ttaagtcgac aatcaacctc tggatta

Download FASTA (ORF) (Full)

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