Transcript: Human NM_001207064.2

Homo sapiens CXADR Ig-like cell adhesion molecule (CXADR), transcript variant 3, mRNA.

Source:
NCBI, updated 2019-08-02
Taxon:
Homo sapiens (human)
Gene:
CXADR (1525)
Length:
5175
CDS:
88..690

Additional Resources:

NCBI RefSeq record:
NM_001207064.2
NBCI Gene record:
CXADR (1525)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001207064.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000271584 CATAGTTCCCAGGTGATATTT pLKO_005 1612 3UTR 100% 15.000 21.000 N CXADR n/a
2 TRCN0000281755 AGAAGCTACATCGGCAGTAAT pLKO_005 543 CDS 100% 13.200 7.920 N CXADR n/a
3 TRCN0000281810 TTACGAGTAATGATCTCAAAT pLKO_005 365 CDS 100% 13.200 7.920 N CXADR n/a
4 TRCN0000061056 CCAAGTACCAAGTGAAGACTT pLKO.1 626 CDS 100% 4.950 2.970 N CXADR n/a
5 TRCN0000271631 CAAGGATGGGTCTATAGTATA pLKO_005 746 3UTR 100% 13.200 6.600 Y CXADR n/a
6 TRCN0000061054 CCAGAAGTTTGAGTATCACTA pLKO.1 137 CDS 100% 4.950 2.475 Y CXADR n/a
7 TRCN0000040213 CCTCCCAAATTGCTGGGATTA pLKO.1 3720 3UTR 100% 1.080 0.540 Y IGF1 n/a
8 TRCN0000155836 CCCAAAGTGCTGGGATTACAA pLKO.1 3460 3UTR 100% 5.625 2.813 Y KLHL30 n/a
9 TRCN0000141025 CCCAAAGTGCTGGGATTACTT pLKO.1 3460 3UTR 100% 5.625 2.813 Y EID2B n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001207064.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_06068 pDONR223 100% 54.7% 41.9% None 120A>G;414_415ins418;600_601ins77 n/a
2 ccsbBroad304_06068 pLX_304 0% 54.7% 41.9% V5 120A>G;414_415ins418;600_601ins77 n/a
3 TRCN0000469000 CATCCCCTGTGGTCTGTCATTTTC pLX_317 44.8% 54.7% 41.9% V5 120A>G;414_415ins418;600_601ins77 n/a
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