Construct: ORF ccsbBroad304_06155
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF000236.1_s304c1, BRDN0000410253
- Derived from:
- ccsbBroadEn_06155
- DNA Barcode:
- None
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ELF1 (1997)
Vector Information:
- Vector Backbone:
- pLX_304
- Pol II Cassette 1:
- PGK-BlastR
- Pol II Cassette 2:
- CMV-ccsbBroad304_06155
- Selection Marker:
- BlastR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 1997 | ELF1 | E74 like ETS transcription ... | NM_001370330.1 | 99.9% | 100% | 942G>A |
| 2 | human | 1997 | ELF1 | E74 like ETS transcription ... | NM_001370331.1 | 99.9% | 100% | 942G>A |
| 3 | human | 1997 | ELF1 | E74 like ETS transcription ... | NM_001370332.1 | 99.9% | 100% | 942G>A |
| 4 | human | 1997 | ELF1 | E74 like ETS transcription ... | NM_172373.4 | 99.9% | 100% | 942G>A |
| 5 | human | 1997 | ELF1 | E74 like ETS transcription ... | NM_001145353.1 | 96% | 96.1% | 361_362ins72;870G>A |
| 6 | human | 1997 | ELF1 | E74 like ETS transcription ... | NM_001370329.1 | 90.4% | 90.4% | 0_1ins177;765G>A |
| 7 | mouse | 13709 | Elf1 | E74-like factor 1 | NM_001286411.1 | 86.6% | 88.5% | (many diffs) |
| 8 | mouse | 13709 | Elf1 | E74-like factor 1 | NM_007920.4 | 86.6% | 88.5% | (many diffs) |
| 9 | mouse | 13709 | Elf1 | E74-like factor 1 | XM_011244946.2 | 86.6% | 88.5% | (many diffs) |
| 10 | mouse | 13709 | Elf1 | E74-like factor 1 | XM_011244947.2 | 86.6% | 88.5% | (many diffs) |
| 11 | mouse | 13709 | Elf1 | E74-like factor 1 | XM_030247638.1 | 86.6% | 88.5% | (many diffs) |
| 12 | mouse | 13709 | Elf1 | E74-like factor 1 | XM_030247639.1 | 86.6% | 88.5% | (many diffs) |
| 13 | mouse | 13709 | Elf1 | E74-like factor 1 | XM_030247640.1 | 86.6% | 88.5% | (many diffs) |
| 14 | mouse | 13709 | Elf1 | E74-like factor 1 | XM_030247641.1 | 86.6% | 88.5% | (many diffs) |
| 15 | mouse | 13709 | Elf1 | E74-like factor 1 | NM_001286412.1 | 81.7% | 83.5% | (many diffs) |
| 16 | mouse | 13709 | Elf1 | E74-like factor 1 | XM_011244948.3 | 81.7% | 83.5% | (many diffs) |
| 17 | mouse | 13709 | Elf1 | E74-like factor 1 | XM_030247642.1 | 59.8% | 61.4% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1923
- ORF length:
- 1857
- Sequence:
-
1 ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag 61 ttggcatggc tgctgttgtc caacagaacg acctagtatt tgaatttgct agtaacgtca 121 tggaggatga acgacagctt ggtgatccag ctatttttcc tgccgtaatt gtggaacatg 181 ttcctggtgc tgatattctc aatagttatg ccggtctagc ctgtgtggaa gagcccaatg 241 acatgattac tgagagttca ctggatgttg ctgaagaaga aatcatagac gatgatgatg 301 atgacatcac ccttacagtt gaagcttctt gtcatgacgg ggatgaaaca attgaaacta 361 ttgaggctgc tgaggcactc ctcaatatgg attcccctgg ccctatgctg gatgaaaaac 421 gaataaataa taatatattt agttcacctg aagatgacat ggttgttgcc ccagtcaccc 481 atgtgtccgt cacattagat gggattcctg aagtgatgga aacacagcag gtgcaagaaa 541 aatatgcaga ctcaccggga gcctcatcac cagaacagcc taagaggaaa aaaggaagaa 601 aaactaaacc accacgacca gattccccag ccactacgcc aaatatatct gtgaagaaga 661 aaaacaaaga tggaaaggga aacacaattt atctttggga gtttttactg gcactgctcc 721 aggacaaggc tacttgtcct aaatacatca agtggaccca gcgagagaaa ggcattttta 781 aattggtgga ttctaaagca gtgtccaggt tgtgggggaa gcacaaaaac aaacctgata 841 tgaattatga gaccatggga agagcactca ggtactatta ccaaaggggt attctggcaa 901 aagtggaagg tcagcgcttg gtgtatcagt ttaaagaaat gccaaaagat cttatatata 961 taaatgatga ggatccaagt tccagcatag agtcttcaga tccatcacta tcttcatcag 1021 ccacttcaaa taggaatcaa accagccggt cgagagtatc ttcaagtcca ggggtaaaag 1081 gaggagccac tacagttcta aaaccaggga attctaaagc tgcaaaaccc aaagatcctg 1141 tggaagttgc acaaccatca gaagttttga ggacagtgca gcccacgcag tctccatatc 1201 ctacccagct cttccggact gttcatgtag tacagccagt acaggctgtc ccagagggag 1261 aagcagctag aaccagtacc atgcaggatg aaacattaaa ttcttccgtt cagagtatta 1321 ggactataca ggctccaacc caagttccag tggttgtgtc tcctaggaat cagcagttgc 1381 atacagtaac actccaaaca gtgccactca caacagttat agccagcaca gatccatcag 1441 caggtactgg atctcagaag tttattttac aagccattcc atcatcacag cccatgacag 1501 tactgaaaga aaatgtcatg ctgcagtcac aaaaggcggg ctctcctcct tcaattgtct 1561 tgggccctgc ccaggttcag caggtcctta ctagcaatgt tcagaccatt tgcaatggaa 1621 ccgtcagtgt ggcttcctct ccatccttca gtgctactgc acctgtggtg accttttctc 1681 ctcgcagttc acagctggtt gctcacccac ctggcactgt aatcacttca gttatcaaaa 1741 ctcaagaaac aaaaactctt acacaggaag tagagaaaaa ggaatctgaa gatcatttga 1801 aagagaacac tgagaaaacg gagcagcagc cacagcctta tgtgatggta gtgtccagtt 1861 ccaatggatt tacttctcag gtagctatga aacaaaacga actgctggaa cccaactctt 1921 tttacccaac tttcttgtac aaagtggttg gtaagcctat ccctaaccct ctcctcggtc 1981 tcgattctac gtagtaatga gctagcgcta accggtggcg cgttaagtcg acaatcaacc 2041 tctggatta