Transcript: Mouse XM_011244948.3

PREDICTED: Mus musculus E74-like factor 1 (Elf1), transcript variant X7, mRNA.

Source:
NCBI, updated 2019-08-08
Taxon:
Mus musculus (mouse)
Gene:
Elf1 (13709)
Length:
3740
CDS:
314..2041

Additional Resources:

NCBI RefSeq record:
XM_011244948.3
NBCI Gene record:
Elf1 (13709)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_011244948.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000081834 CCCGACGACTACACCAAATAT pLKO.1 763 CDS 100% 15.000 21.000 N Elf1 n/a
2 TRCN0000226193 CCCGACGACTACACCAAATAT pLKO_005 763 CDS 100% 15.000 21.000 N Elf1 n/a
3 TRCN0000232057 AGCGCTTGGTGTATCAGTTTA pLKO_005 1050 CDS 100% 13.200 18.480 N ELF1 n/a
4 TRCN0000218749 AGCCTTATGTGATGGTGTTAT pLKO_005 1950 CDS 100% 13.200 10.560 N Elf1 n/a
5 TRCN0000218819 ACTATCAGGTCTGCCATAAAT pLKO_005 3221 3UTR 100% 15.000 10.500 N Elf1 n/a
6 TRCN0000232056 AGAGCACTCAGGTACTATTAC pLKO_005 998 CDS 100% 13.200 9.240 N ELF1 n/a
7 TRCN0000232055 ATGTTCCTGGTGCTGATATTC pLKO_005 426 CDS 100% 13.200 9.240 N ELF1 n/a
8 TRCN0000226194 GTTCCAAGTATTAGGACTATA pLKO_005 1442 CDS 100% 13.200 9.240 N Elf1 n/a
9 TRCN0000257267 GTGTTTGAATTTGCAAGTAAC pLKO_005 344 CDS 100% 10.800 7.560 N Elf1 n/a
10 TRCN0000081835 GCCGAAGATGATTTGAATGAA pLKO.1 1901 CDS 100% 5.625 3.938 N Elf1 n/a
11 TRCN0000081836 CCGGGAATTCTAAAGCTGCAA pLKO.1 1242 CDS 100% 0.000 0.000 N Elf1 n/a
12 TRCN0000081837 CGGGAATTCTAAAGCTGCAAA pLKO.1 1243 CDS 100% 0.000 0.000 N Elf1 n/a
13 TRCN0000081833 CGCAGGTGAATTTCTGAGTTT pLKO.1 2817 3UTR 100% 4.950 2.970 N Elf1 n/a
14 TRCN0000054408 ACGCCTTTAATCCCAGCACTT pLKO.1 2786 3UTR 100% 4.050 2.025 Y Mtif2 n/a
Download CSV

shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011244948.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

Download CSV

All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_06155 pDONR223 100% 81.7% 83.5% None (many diffs) n/a
2 ccsbBroad304_06155 pLX_304 0% 81.7% 83.5% V5 (many diffs) n/a
Download CSV