Construct: ORF ccsbBroad304_06474

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF011217.1_s304c1, BRDN0000411863
Derived from:
ccsbBroadEn_06474
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
KCNC1 (3746)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_06474
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 3746 KCNC1 potassium voltage-gated cha... NM_004976.4 99.9% 99.8% 64T>C
2 human 3746 KCNC1 potassium voltage-gated cha... NM_001112741.2 86.3% 85.8% (many diffs)
3 human 3746 KCNC1 potassium voltage-gated cha... XR_930866.2 41.8% 1_1193del;1257T>C;2727_3661del
4 mouse 16502 Kcnc1 potassium voltage gated cha... NM_008421.3 93.6% 99.6% (many diffs)
5 mouse 16502 Kcnc1 potassium voltage gated cha... NM_001112739.2 80.8% 85.6% (many diffs)
6 mouse 16502 Kcnc1 potassium voltage gated cha... XM_006540648.1 80.5% 85.3% (many diffs)
7 mouse 16502 Kcnc1 potassium voltage gated cha... XM_006540647.1 79.5% 84.6% (many diffs)
8 mouse 16502 Kcnc1 potassium voltage gated cha... XM_006540646.1 79.2% 84.3% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
1602
ORF length:
1533
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcaccat gggccaaggg gacgagagcg agcgcatcgt gatcaacgtg ggcggcacgc
121gccaccagac gcaccgctcg accctgcgca cgctgcccgg cacgcggctc gcctggctgg
181cggagcccga cgcccacagc cacttcgact atgacccgcg tgctgacgag ttcttcttcg
241accgccaccc cggcgtcttc gcgcacatcc tgaactacta ccgcacgggc aagctgcact
301gcccagccga cgtgtgcggg ccgctctacg aggaggagct ggccttctgg ggcatcgacg
361agaccgacgt ggagccctgc tgctggatga cgtaccgcca gcaccgcgac gccgaggagg
421ctctggacag cttcggcggc gctcctctgg acaacagcgc cgacgacgcg gacgccgacg
481gccctggcga ctcgggcgac ggcgaggacg agctggagat gaccaagcgc ctggcgctca
541gtgactcccc ggatggccgg cctggcggct tttggcgccg ctggcagccg cgcatctggg
601cgctcttcga ggacccgtac tcgtcccgct acgcgcggta tgtggccttc gcttccctct
661tcttcatcct ggtctccatc accaccttct gcctggagac ccacgagcgc ttcaacccca
721tcgtgaacaa gacggagatc gagaacgttc gcaatggcac gcaagtgcgc tactaccggg
781aggccgagac ggaggccttc cttacctaca tcgagggcgt ctgtgtggtc tggttcacct
841tcgagttcct catgcgtgtc atcttctgcc ccaacaaggt agagttcatc aagaactcgc
901tcaacatcat tgactttgtg gccatcctgc ccttctacct ggaggtgggg ctgagcggcc
961tgtcctccaa ggcagccaag gacgtgctgg gcttcctgcg cgtcgtccgc ttcgtgcgca
1021tcttgcgcat ctttaagctg acccgccact ttgtgggcct gcgggtcctg ggccacacgc
1081tccgagccag caccaacgag ttcctgctgc tcatcatctt cctggccttg ggcgtgctga
1141tcttcgccac catgatctac tacgccgaga ggataggggc acagcccaat gaccccagcg
1201ccagtgagca cacgcacttt aagaacatcc ccatcggctt ctggtgggcc gtggtcacca
1261tgacgaccct gggctatgga gacatgtacc cgcagacgtg gtccggcatg ctggtggggg
1321ctctgtgtgc gctggcgggc gtgctcacca tcgccatgcc cgtgcccgtc atcgtgaaca
1381atttcgggat gtattactcc ttagccatgg ctaagcagaa actaccaaag aaaaaaaaga
1441agcatattcc gcggccaccg cagctgggat ctcccaatta ttgtaaatct gtcgtaaact
1501ctccacacca cagtactcag agtgacacat gtccgctggc ccaggaagaa attttagaaa
1561ttaacagagc aggtaggaaa cctcttagag gcatgtcgat cttgccaact ttcttgtaca
1621aagtggttgg taagcctatc cctaaccctc tcctcggtct cgattctacg tagtaatgag
1681ctagcgctaa ccggtggcgc gttaagtcga caatcaacct ctggatta

Download FASTA (ORF) (Full)