Construct: ORF ccsbBroad304_06536

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF005505.1_s304c1, BRDN0000462003
Derived from:
ccsbBroadEn_06536
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
LPP (4026)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_06536
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 4026 LPP LIM domain containing prefe... NM_001167671.2 99.7% 99.8% (many diffs)
2 human 4026 LPP LIM domain containing prefe... NM_005578.4 99.7% 99.8% (many diffs)
3 human 4026 LPP LIM domain containing prefe... XM_005247446.4 99.7% 99.8% (many diffs)
4 human 4026 LPP LIM domain containing prefe... XM_005247450.5 99.7% 99.8% (many diffs)
5 human 4026 LPP LIM domain containing prefe... XM_005247451.4 99.7% 99.8% (many diffs)
6 human 4026 LPP LIM domain containing prefe... XM_005247453.2 99.7% 99.8% (many diffs)
7 human 4026 LPP LIM domain containing prefe... XM_011512820.3 99.7% 99.8% (many diffs)
8 human 4026 LPP LIM domain containing prefe... XM_011512827.2 99.7% 99.8% (many diffs)
9 human 4026 LPP LIM domain containing prefe... XM_011512828.3 99.7% 99.8% (many diffs)
10 human 4026 LPP LIM domain containing prefe... XM_011512831.3 99.7% 99.8% (many diffs)
11 human 4026 LPP LIM domain containing prefe... XM_011512833.2 99.7% 99.8% (many diffs)
12 human 4026 LPP LIM domain containing prefe... XM_011512834.3 99.7% 99.8% (many diffs)
13 human 4026 LPP LIM domain containing prefe... XM_017006377.1 99.7% 99.8% (many diffs)
14 human 4026 LPP LIM domain containing prefe... XM_017006378.1 99.7% 99.8% (many diffs)
15 human 4026 LPP LIM domain containing prefe... XM_017006379.2 99.7% 99.8% (many diffs)
16 human 4026 LPP LIM domain containing prefe... XM_017006380.2 99.7% 99.8% (many diffs)
17 human 4026 LPP LIM domain containing prefe... XM_024453519.1 99.7% 99.8% (many diffs)
18 human 4026 LPP LIM domain containing prefe... XM_011512823.2 95.8% 95.9% (many diffs)
19 human 4026 LPP LIM domain containing prefe... NM_001167672.3 75.8% 75.8% (many diffs)
20 human 4026 LPP LIM domain containing prefe... XM_011512836.3 73.2% 73.3% (many diffs)
21 human 4026 LPP LIM domain containing prefe... XM_017006382.1 73.2% 73.3% (many diffs)
22 human 4026 LPP LIM domain containing prefe... XM_017006381.1 67.4% 67.4% (many diffs)
23 human 4026 LPP LIM domain containing prefe... XR_001740144.1 17.6% (many diffs)
24 mouse 210126 Lpp LIM domain containing prefe... XM_017316922.1 85.7% 89.3% (many diffs)
25 mouse 210126 Lpp LIM domain containing prefe... NM_001145952.1 85.6% 89.2% (many diffs)
26 mouse 210126 Lpp LIM domain containing prefe... NM_178665.5 85.6% 89.2% (many diffs)
27 mouse 210126 Lpp LIM domain containing prefe... XM_006521957.3 85.6% 89.2% (many diffs)
28 mouse 210126 Lpp LIM domain containing prefe... NM_001145954.1 67.8% 68.7% (many diffs)
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Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
1905
ORF length:
1836
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcaccat gtctcaccca tcttggctgc cacccaaaag cactggtgag cccctcggcc
121atgtgcctgc acggatggag accacccatt cctttgggaa ccccagcatt tcagtgtcta
181cacaacagcc acccaaaaag tttgccccgg tagttgctcc aaaacctaag tacaacccat
241acaaacaacc tggaggtgag ggtgattttc ttccaccccc acctccacct ctagatgatt
301ccagtgccct tccatctatc tctggaaact ttcctcctcc accacctctt gatgaagagg
361ctttcaaagt acaggggaat cccggaggca agacacttga ggagatgcgc tccagcctgg
421acgctgagat tgactccttg accagcatct tggctgacct tgagtgcagc tccccctata
481agcctcggcc tccacagagc tccactggtt caacagcctc tcctccagtt tcgaccccag
541tcacaggaca caagagaatg gtcatcccga accaaccccc tctaacagca accaagaagt
601ctacattgaa accacagcct gcaccccagg ctggacccat ccctgtggct ccaatcggaa
661cactcaaacc ccagcctcag ccagtcccag cctcctacac cacggcctcc acttcttcaa
721ggcctacctt taatgtgcag gtgaagtcag cccagcccag ccctcattat atggctgccc
781cttcatcagg acaaatttat ggctcagggc cccagggcta taacactcag ccagttcctg
841tctctgggca gtgtccacct ccttcaacac ggggaggcat ggattatgcc tacattccac
901caccaggact tcagccggag cctgggtatg ggtatgcccc caaccaggga cgctattatg
961aaggctacta tgcagcaggg ccaggctatg ggggcagaaa tgactctgat cctacctatg
1021gtcaacaagg tcacccaaat acctggaaac gggaaccagg gtacactcct cctggagcag
1081ggaaccagaa ccctcctggg atgtatccag tcactggtcc caagaagacc tatatcacag
1141atcctgtttc agccccctgt gcgccaccat tgcagccaaa gggtggccat tcagggcaac
1201tggggccttc gtcagttgcc ccttcattcc gcccagagga tgagcttgag cacctgacca
1261aaaagatgct gtatgacatg gaaaatccac ctgctgacga atactttggc cgctgtgctc
1321gctgtggaga aaacgtagtt ggggaaggta caggatgcac tgccatggat caggtcttcc
1381acgtggattg ttttacctgc atcatctgca acaacaagct ccgagggcag ccattctatg
1441ctgtggaaaa gaaagcatac tgcgagccct gctacattaa tactcttgag cagtgcaatg
1501tgtgttccaa gcccatcatg gagcggattc tccgagccac cgggaaggcc tatcatcctc
1561actgtttcac ctgcgtgatg tgccaccgca gcctggatgg gatcccattc actgtggatg
1621ctggcgggct cattcactgc attgaggact tccacaagaa atttgccccg cggtgttctg
1681tgtgcaagga gcctattatg ccagccccgg gccaggagga gactgtccgt attgtggctt
1741tggatcgaga tttccatgtt cactgctacc gatgcgagga ttgcggtggt ctcctgtctg
1801aaggagataa ccaaggctgc taccccttgg atgggcacat cctctgcaag acctgcaact
1861ctgcccgcat cagggtgttg accgccaagg cgagcactga ccttttgcca actttcttgt
1921acaaagtggt tggtaagcct atccctaacc ctctcctcgg tctcgattct acgtagtaat
1981gagctagcgc taaccggtgg cgcgttaagt cgacaatcaa cctctggatt a

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