Transcript: Mouse NM_001145954.1

Mus musculus LIM domain containing preferred translocation partner in lipoma (Lpp), transcript variant 3, mRNA.

Source:
NCBI, updated 2017-05-21
Taxon:
Mus musculus (mouse)
Gene:
Lpp (210126)
Length:
14876
CDS:
133..1599

Additional Resources:

NCBI RefSeq record:
NM_001145954.1
NBCI Gene record:
Lpp (210126)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_001145954.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000113496 CGCTATTATGAACCTTACTAT pLKO.1 643 CDS 100% 5.625 7.875 N Lpp n/a
2 TRCN0000113499 AGGACGCTATTATGAACCTTA pLKO.1 639 CDS 100% 4.950 6.930 N Lpp n/a
3 TRCN0000326189 AGGACGCTATTATGAACCTTA pLKO_005 639 CDS 100% 4.950 6.930 N Lpp n/a
4 TRCN0000113495 CCCACTTTAGTCTGCAACTAT pLKO.1 2193 3UTR 100% 5.625 3.938 N Lpp n/a
5 TRCN0000326187 CCCACTTTAGTCTGCAACTAT pLKO_005 2193 3UTR 100% 5.625 3.938 N Lpp n/a
6 TRCN0000113497 CCTATATCACAGACCCTGTTT pLKO.1 821 CDS 100% 4.950 3.465 N Lpp n/a
7 TRCN0000326114 CCTATATCACAGACCCTGTTT pLKO_005 821 CDS 100% 4.950 3.465 N Lpp n/a
8 TRCN0000113498 CGAACACTTGACCAAGAAGAT pLKO.1 939 CDS 100% 4.950 3.465 N Lpp n/a
9 TRCN0000326112 CGAACACTTGACCAAGAAGAT pLKO_005 939 CDS 100% 4.950 3.465 N Lpp n/a
10 TRCN0000166364 CACACACACACACACACACAA pLKO.1 5622 3UTR 100% 4.950 2.475 Y KAAG1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001145954.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_06536 pDONR223 100% 67.8% 68.7% None (many diffs) n/a
2 ccsbBroad304_06536 pLX_304 0% 67.8% 68.7% V5 (many diffs) n/a
3 TRCN0000475808 TCTACGACGATTGCGTAGTACTTG pLX_317 18.5% 67.8% 68.7% V5 (many diffs) n/a
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