Construct: ORF ccsbBroad304_06917

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF018555.1_s304c1, BRDN0000407657
Derived from:
ccsbBroadEn_06917
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
SCTR (6344)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_06917
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 6344 SCTR secretin receptor NM_002980.2 99.8% 99.7% 652G>A;1176T>C
2 human 6344 SCTR secretin receptor XM_011511621.2 98.7% 98.6% 652G>A;851_865del;1191T>C
3 human 6344 SCTR secretin receptor XM_017004670.1 94.7% 93.7% (many diffs)
4 human 6344 SCTR secretin receptor XM_017004671.1 90.6% 90.5% (many diffs)
5 human 6344 SCTR secretin receptor XM_024453038.1 84.3% 84.3% 0_1ins204;448G>A;972T>C
6 human 6344 SCTR secretin receptor XM_017004672.1 83.4% 83.3% (many diffs)
7 human 6344 SCTR secretin receptor XR_922984.2 66.7% (many diffs)
8 human 6344 SCTR secretin receptor XR_001738887.1 62.6% (many diffs)
9 human 6344 SCTR secretin receptor XR_001738889.1 60.3% (many diffs)
10 human 6344 SCTR secretin receptor XM_005263730.5 59.3% 59.3% 0_1ins534;118G>A;642T>C
11 human 6344 SCTR secretin receptor XM_017004673.1 58.7% 58.6% (many diffs)
12 human 6344 SCTR secretin receptor XR_001738888.1 54.1% (many diffs)
13 mouse 319229 Sctr secretin receptor XM_006529688.3 70.3% 69.3% (many diffs)
14 mouse 319229 Sctr secretin receptor XM_011248029.1 70.3% 69.3% (many diffs)
15 mouse 319229 Sctr secretin receptor XM_011248030.2 70.3% 69.3% (many diffs)
16 mouse 319229 Sctr secretin receptor XM_011248031.2 66.6% 65.8% (many diffs)
17 mouse 319229 Sctr secretin receptor XM_006529689.3 58.6% 54.9% (many diffs)
18 mouse 319229 Sctr secretin receptor XM_006529690.3 42.9% 42.2% (many diffs)
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Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1386
ORF length:
1320
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatgcg tccccacctg tcgccgccgc tgcagcagct actactgccg gtgctgctcg
121cctgcgccgc gcactcgact ggagcccttc cccgactatg tgacgtgcta caagtgctgt
181gggaagagca agaccagtgc ctgcaggaac tctccagaga gcagacagga gacctgggca
241cggagcagcc agtgccaggt tgtgagggga tgtgggacaa cataagctgc tggccctctt
301ctgtgccggg ccggatggtg gaggtggaat gcccgagatt cctccggatg ctcaccagca
361gaaatggttc cttgttccga aactgcacac aggatggctg gtcagaaacc ttccccaggc
421ctaatctggc ctgtggcgtt aatgtgaacg actcttccaa cgagaagcgg cactcctacc
481tgctgaagct gaaagtcatg tacaccgtgg gctacagctc ctccctggtc atgctcctgg
541tcgcccttgg catcctctgt gctttccgga ggctccactg cactcgcaac tacatccaca
601tgcacctgtt cgtgtccttc atccttcgtg ccctgtccaa cttcatcaag gacgccgtgc
661tcttctcctc agatgatgtc acctactgcg atgcccacag ggcgggctgc aagctgatca
721tggtgctgtt ccagtactgc atcatggcca actactcctg gctgctggtg gaaggcctct
781accttcacac actcctcgcc atctccttct tctctgaaag aaagtacctc cagggatttg
841tggcattcgg atggggttct ccagccattt ttgttgcttt gtgggctatt gccagacact
901ttctggaaga tgttgggtgc tgggacatca atgccaacgc atccatctgg tggatcattc
961gtggtcctgt gatcctctcc atcctgatta atttcatcct tttcataaac attctaagaa
1021tcctgatgag aaaacttaga acccaagaaa caagaggaaa tgaagtcagc cattataagc
1081gcctggccag gtccactctc ctgctgatcc ccctctttgg catccactac atcgtcttcg
1141ccttctcccc agaggacgct atggagatcc agctgttttt tgaactagcc cttggctcat
1201tccagggact ggtggtggcc gtcctctact gcttcctcaa cggggaggtg cagctggagg
1261ttcagaagaa gtggcagcaa tggcacctcc gtgagttccc actgcacccc gtggcctcct
1321tcagcaacag caccaaggcc agccacttgg agcagagcca gggcacctgc aggaccagca
1381tcatctgccc aactttcttg tacaaagtgg ttggtaagcc tatccctaac cctctcctcg
1441gtctcgattc tacgtagtaa tgagctagcg ctaaccggtg gcgcgttaag tcgacaatca
1501acctctggat ta

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