Construct: ORF ccsbBroad304_06944

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF006241.1_s304c1, BRDN0000409868
Derived from:
ccsbBroadEn_06944
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
SH3BGR (6450)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_06944
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 6450 SH3BGR SH3 domain binding glutamat... NM_007341.2 99.8% 99.5% 69C>G
2 human 6450 SH3BGR SH3 domain binding glutamat... NM_001317740.1 86.8% 86.6% 69C>G;501_502ins93
3 human 106865373 WRB-SH3BGR WRB-SH3BGR readthrough NM_001317744.2 72.8% 58.9% (many diffs)
4 human 6450 SH3BGR SH3 domain binding glutamat... NM_001001713.1 53.5% 53.5% 0_1ins333
5 human 6450 SH3BGR SH3 domain binding glutamat... NM_001317742.1 53.5% 53.5% 0_1ins333
6 human 6450 SH3BGR SH3 domain binding glutamat... NM_001317741.1 40.5% 40.5% 0_1ins333;168_169ins93
7 human 106865373 WRB-SH3BGR WRB-SH3BGR readthrough NR_146618.2 28.5% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
783
ORF length:
717
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatgcc tctgctgctc cttggagaga cagagcctct taagttggag cgggactgcc
121ggagcccagt ggagccctgg gctgctgcca gccccgacct ggcacttgct tgcctgtgtc
181actgtcagga tttgtctagc ggcgcattcc ctaacagggg tgtgttgggg ggagtcctct
241ttccaactgt cgaaatggtt atcaaagtgt ttgttgctac atcttctggg tccatagcga
301ttaggaagaa acagcaagaa gtagtgggtt ttttggaagc gaataaaatc gactttaagg
361aattagatat tgctggagat gaagacaaca ggaggtggat gagagagaat gttcctggag
421agaaaaaacc tcaaaatggg attcctttgc ctccccagat cttcaatgag gagcagtact
481gtggggattt tgactctttc ttctctgcaa aagaagagaa tattatttat tccttccttg
541gtttggctcc tcctccagac tcaaagggat cagagaaggc tgaagaaggt ggagaaactg
601aggcacaaaa agagggcagt gaagatgtgg gcaacctccc tgaagcccag gagaagaatg
661aagaagaagg agagacagcc acagaagaga cggaagaaat agccatggag ggtgcggaag
721gggaagccga ggaggaggaa gaaactgcag aaggagaaga gcctggagaa gacgaagatt
781cctacccaac tttcttgtac aaagtggttg gtaagcctat ccctaaccct ctcctcggtc
841tcgattctac gtagtaatga gctagcgcta accggtggcg cgttaagtcg acaatcaacc
901tctggatta

Download FASTA (ORF) (Full)