Construct: ORF ccsbBroad304_06954

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF007412.1_s304c1, BRDN0000410289
Derived from:
ccsbBroadEn_06954
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
SLC1A1 (6505)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_06954
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 6505 SLC1A1 solute carrier family 1 mem... NM_004170.6 99.9% 99.8% 274C>G
2 human 6505 SLC1A1 solute carrier family 1 mem... XM_011518007.1 95.7% 95.6% 90_158del;343C>G
3 human 6505 SLC1A1 solute carrier family 1 mem... XM_011518008.3 95.6% 92.7% (many diffs)
4 human 6505 SLC1A1 solute carrier family 1 mem... XM_011518009.3 95.6% 94% (many diffs)
5 human 6505 SLC1A1 solute carrier family 1 mem... XM_017015043.1 93% 92.9% 274C>G;766_767ins108
6 human 6505 SLC1A1 solute carrier family 1 mem... XM_011518010.1 90.9% 90.8% 89_90ins141;133C>G
7 human 6505 SLC1A1 solute carrier family 1 mem... XM_017015042.1 89.1% 89% 90_158del;343C>G;835_836ins108
8 mouse 20510 Slc1a1 solute carrier family 1 (ne... NM_009199.2 85.6% 89.8% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1638
ORF length:
1572
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatggg gaaaccggcg aggaaaggat gcgagtggaa gcgcttcctg aagaataact
121gggtgttgct gtccaccgtg gccgcggtgg tgctaggcat taccacagga gtcttggttc
181gagaacacag caacctctca actctagaga aattctactt tgcttttcct ggagaaattc
241taatgcggat gctgaaactc atcattttgc cattaattat atccagcatg attacaggtg
301ttgctgcact ggattccaac gtatccggaa aaattggtgt gcgcgctgtc gtgtattatt
361tctgtaccac tctcattgct gttattctag gtattgtgct ggtggtgagc atcaagcctg
421gtgtcaccca gaaagtgggt gaaattgcga ggacaggcag cacccctgaa gtcagtacgg
481tggatgccat gttagatctc atcaggaata tgttccctga gaatcttgtc caggcctgtt
541ttcagcagta caaaactaag cgtgaagaag tgaagcctcc cagcgatcca gagatgaaca
601tgacagaaga gtccttcaca gctgtcatga caactgcaat ttccaagaac aaaacaaagg
661aatacaaaat tgttggcatg tattcagatg gcataaacgt cctgggcttg attgtctttt
721gccttgtctt tggacttgtc attggaaaaa tgggagaaaa gggacaaatt ctggtggatt
781tcttcaatgc tttgagtgat gcaaccatga aaatcgttca gatcatcatg tgttatatgc
841cactaggtat tttgttcctg attgctggga agatcataga agttgaagac tgggaaatat
901tccgcaagct gggcctttac atggccacag tcctgactgg gcttgcaatc cactccattg
961taattctccc gctgatatat ttcatagtcg tacgaaagaa ccctttccga tttgccatgg
1021gaatggccca ggctctcctg acagctctca tgatctcttc cagttcagca acactgcctg
1081tcaccttccg ctgtgctgaa gaaaataacc aggtggacaa gaggatcact cgattcgtgt
1141tacccgttgg tgcaacaatc aacatggatg ggactgcgct ctatgaagca gtggcagcgg
1201tgtttattgc acagttgaat gacctggact tgggcattgg gcagatcatc accatcagta
1261tcacggccac atctgccagc atcggagctg ctggcgtgcc ccaggctggc ctggtgacca
1321tggtgattgt gctgagtgcc gtgggcctgc ccgccgagga tgtcaccctg atcattgctg
1381tcgactggct cctggaccgg ttcaggacca tggtcaacgt ccttggtgat gcttttggga
1441cgggcattgt ggaaaagctc tccaagaagg agctggagca gatggatgtt tcatctgaag
1501tcaacattgt gaatcccttt gccttggaat ccacaatcct tgacaacgaa gactcagaca
1561ccaagaagtc ttatgtcaat ggaggctttg cagtagacaa gtctgacacc atctcattca
1621cccagacctc acagttctac ccaactttct tgtacaaagt ggttggtaag cctatcccta
1681accctctcct cggtctcgat tctacgtagt aatgagctag cgctaaccgg tggcgcgtta
1741agtcgacaat caacctctgg atta

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