Construct: ORF ccsbBroad304_06973

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF014370.1_s304c1, BRDN0000411770
Derived from:
ccsbBroadEn_06973
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
SLC22A1 (6580)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_06973
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 6580 SLC22A1 solute carrier family 22 me... NM_003057.3 99.9% 99.8% 480G>C
2 human 6580 SLC22A1 solute carrier family 22 me... XM_005267103.2 93.1% 84.6% 480G>C;1498_1585del;1719_1720ins31
3 human 6580 SLC22A1 solute carrier family 22 me... NM_153187.1 91.2% 83.2% 480G>C;1384_1385ins113;1518_1519ins31
4 human 6580 SLC22A1 solute carrier family 22 me... XM_006715552.2 87.1% 87% 480G>C;1383_1384ins213
5 human 6580 SLC22A1 solute carrier family 22 me... XM_005267102.5 80.8% 78.2% 480G>C;1497_1498ins100;1563_1830del
6 human 6580 SLC22A1 solute carrier family 22 me... XM_005267104.5 51% 48.5% 0_1ins576;921_922ins100;987_1254del
7 human 6580 SLC22A1 solute carrier family 22 me... XM_005267105.5 51% 48.5% 0_1ins576;921_922ins100;987_1254del
8 human 6580 SLC22A1 solute carrier family 22 me... XM_011536074.3 51% 48.5% 0_1ins576;921_922ins100;987_1254del
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
1731
ORF length:
1662
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcaccat gcccaccgtg gatgacattc tggagcaggt tggggagtct ggctggttcc
121agaagcaagc cttcctcatc ttatgcctgc tgtcggctgc ctttgcgccc atctgtgtgg
181gcatcgtctt cctgggtttc acacctgacc accactgcca gagtcctggg gtggctgagc
241tgagccagcg ctgtggctgg agccctgcgg aggagctgaa ctatacagtg ccaggcctgg
301ggcccgcggg cgaggccttc cttggccagt gcaggcgcta tgaagtggac tggaaccaga
361gcgccctcag ctgtgtagac cccctggcta gcctggccac caacaggagc cacctgccgc
421tgggtccctg ccaggatggc tgggtgtatg acacgcccgg ctcttccatc gtcactgagt
481tcaacctggt gtgtgctgac tcctggaagc tggacctctt tcagtcctgt ttgaatgcgg
541gcttcttctt tggctctctc ggtgttggct actttgcaga caggtttggc cgtaagctgt
601gtctcctggg aactgtgctg gtcaacgcgg tgtcgggcgt gctcatggcc ttctcgccca
661actacatgtc catgctgctc ttccgcctgc tgcagggcct ggtcagcaag ggcaactgga
721tggctggcta caccctaatc acagaatttg ttggctcggg ctccagaaga acggtggcga
781tcatgtacca gatggccttc acggtggggc tggtggcgct taccgggctg gcctacgccc
841tgcctcactg gcgctggctg cagctggcag tctccctgcc caccttcctc ttcctgctct
901actactggtg tgtgccggag tcccctcggt ggctgttatc acaaaaaaga aacactgaag
961caataaagat aatggaccac atcgctcaaa agaatgggaa gttgcctcct gctgatttaa
1021agatgctttc cctcgaagag gatgtcaccg aaaagctgag cccttcattt gcagacctgt
1081tccgcacgcc gcgcctgagg aagcgcacct tcatcctgat gtacctgtgg ttcacggact
1141ctgtgctcta tcaggggctc atcctgcaca tgggcgccac cagcgggaac ctctacctgg
1201atttccttta ctccgctctg gtcgaaatcc cgggggcctt catagccctc atcaccattg
1261accgcgtggg ccgcatctac cccatggcca tgtcaaattt gttggcgggg gcagcctgcc
1321tcgtcatgat ttttatctca cctgacctgc actggttaaa catcataatc atgtgtgttg
1381gccgaatggg aatcaccatt gcaatacaaa tgatctgcct ggtgaatgct gagctgtacc
1441ccacattcgt caggaacctc ggagtgatgg tgtgttcctc cctgtgtgac ataggtggga
1501taatcacccc cttcatagtc ttcaggctga gggaggtctg gcaagccttg cccctcattt
1561tgtttgcggt gttgggcctg cttgccgcgg gagtgacgct acttcttcca gagaccaagg
1621gggtcgcttt gccagagacc atgaaggacg ccgagaacct tgggagaaaa gcaaagccca
1681aagaaaacac gatttacctt aaggtccaaa cctcagaacc ctcgggcacc ttgccaactt
1741tcttgtacaa agtggttggt aagcctatcc ctaaccctct cctcggtctc gattctacgt
1801agtaatgagc tagcgctaac cggtggcgcg ttaagtcgac aatcaacctc tggatta

Download FASTA (ORF) (Full)

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