Construct: ORF ccsbBroad304_07024

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF014286.1_s304c1, BRDN0000410241
Derived from:
ccsbBroadEn_07024
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
SYK (6850)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_07024
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 6850 SYK spleen associated tyrosine ... NM_001135052.4 99.9% 99.8% 17T>A
2 human 6850 SYK spleen associated tyrosine ... NM_001174168.3 99.9% 99.8% 17T>A
3 human 6850 SYK spleen associated tyrosine ... NM_001174167.3 96.3% 96.2% 17T>A;846_914del
4 human 6850 SYK spleen associated tyrosine ... NM_003177.7 96.3% 96.2% 17T>A;846_914del
5 human 6850 SYK spleen associated tyrosine ... XM_005252147.4 96.3% 96.2% 17T>A;846_914del
6 human 6850 SYK spleen associated tyrosine ... XM_011518946.3 96.3% 96.2% 17T>A;846_914del
7 human 6850 SYK spleen associated tyrosine ... XR_001746370.2 36.2% (many diffs)
8 mouse 20963 Syk spleen tyrosine kinase XM_006516897.4 84.3% 92.1% (many diffs)
9 mouse 20963 Syk spleen tyrosine kinase NM_001198977.1 82% 88.8% (many diffs)
10 mouse 20963 Syk spleen tyrosine kinase NM_011518.2 82% 88.8% (many diffs)
11 mouse 20963 Syk spleen tyrosine kinase XM_006516895.4 82% 88.8% (many diffs)
12 mouse 20963 Syk spleen tyrosine kinase XM_017315471.2 48.6% 53.1% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1902
ORF length:
1836
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatggc cagcagcggc aaggctgaca gcgccaacca cctgcccttc tttttcggca
121acatcacccg ggaggaggca gaagattacc tggtccaggg gggcatgagt gatgggcttt
181atttgctgcg ccagagccgc aactacctgg gtggcttcgc cctgtccgtg gcccacggga
241ggaaggcaca ccactacacc atcgagcggg agctgaatgg cacctacgcc atcgccggtg
301gcaggaccca tgccagcccc gccgacctct gccactacca ctcccaggag tctgatggcc
361tggtctgcct cctcaagaag cccttcaacc ggccccaagg ggtgcagccc aagactgggc
421cctttgagga tttgaaggaa aacctcatca gggaatatgt gaagcagaca tggaacctgc
481agggtcaggc tctggagcag gccatcatca gtcagaagcc tcagctggag aagctgatcg
541ctaccacagc ccatgaaaaa atgccttggt tccatggaaa aatctctcgg gaagaatctg
601agcaaattgt cctgatagga tcaaagacaa atggaaagtt cctgatccga gccagagaca
661acaacggctc ctacgccctg tgcctgctgc acgaagggaa ggtgctgcac tatcgcatcg
721acaaagacaa gacagggaag ctctccatcc ccgagggaaa gaagttcgac acgctctggc
781agctagtcga gcattattct tataaagcag atggtttgtt aagagttctt actgtcccat
841gtcaaaaaat cggcacacag ggaaatgtta attttggagg ccgtccacaa cttccaggtt
901cccatcctgc gtcctcccct gcccaaggga accggcaaga gagtactgtg tcattcaatc
961cgtatgagcc agaacttgca ccctgggctg cagacaaagg cccccagaga gaagccctac
1021ccatggacac agaggtgtac gagagcccct acgcggaccc cgaggagatc aggcccaagg
1081aggtttacct ggaccgaaag ctgctgacgc tggaagacaa agaactgggc tctggtaatt
1141ttggaactgt gaaaaagggc tactaccaaa tgaaaaaagt tgtgaaaacc gtggctgtga
1201aaatactgaa aaacgaggcc aatgaccccg ctcttaaaga tgagttatta gcagaagcaa
1261atgtcatgca gcagctggac aacccgtaca tcgtgcggat gatcgggata tgcgaggccg
1321agtcctggat gctggttatg gagatggcag aacttggtcc cctcaataag tatttgcagc
1381agaacagaca tgtcaaggat aagaacatca tagaactggt tcatcaggtt tccatgggca
1441tgaagtactt GGAGGAGAGC AATTTTGTGC ACAGAGATCT GGCTGCAAGA AATGTGTTGC
1501TAGTTACCCA ACATTACGCC AAGATCAGTG ATTTCGGACT TTCCAAAGCA CTGCGTGCTG
1561ATGAAAACTA CTACAAGGCC CAGACCCATG GAAAGTGGCC TGTCAAGTGG TACGCTCCGG
1621AATGCATCAA CTACTACAAG TTCTCCAGCA AAAGCGATGT CTGGAGCTTT GGAGTGTTGA
1681TGTGGGAAGC ATTCTCCTAT GGGCAGAAGC CATATCGAGG GATGAAAGGA AGTGAAGTCA
1741CCGCTATGTT AGAGAAAGGA GAGCGGATGG GGTGCCCTGC AGGGTGTCCA AGAGAGATGT
1801ACGATCTCAT GAATCTGTGC TGGACATACG ATGTGGAAAA CAGGCCCGGA TTCGCAGCAG
1861TGGAACTGCG GCTGCGCAAT TACTACTATG ACGTGGTGAA CTACCCAACT TTCTTGTACa
1921aagtggttgg taagcctatc cctaaccctc tcctcggtct cgattctacg tagtaatgag
1981ctagcgctaa ccggtggcgc gttaagtcga caatcaacct ctggatta

Download FASTA (ORF) (Full)