Construct: ORF ccsbBroad304_07051

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF008746.1_s304c1, BRDN0000410602
Derived from:
ccsbBroadEn_07051
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
TFDP1 (7027)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_07051
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 7027 TFDP1 transcription factor Dp-1 NM_007111.5 99.6% 99.2% (many diffs)
2 human 7027 TFDP1 transcription factor Dp-1 XM_005268327.1 99.6% 99.2% (many diffs)
3 human 7027 TFDP1 transcription factor Dp-1 XM_005268328.2 98.7% 98.2% (many diffs)
4 human 7027 TFDP1 transcription factor Dp-1 XM_017020718.1 98.7% 98.2% (many diffs)
5 human 7027 TFDP1 transcription factor Dp-1 XM_017020717.1 85.8% 85.5% (many diffs)
6 human 51270 TFDP3 transcription factor Dp fam... NM_016521.3 85.1% 74.4% (many diffs)
7 human 7027 TFDP1 transcription factor Dp-1 XM_017020719.2 81.9% 81.4% (many diffs)
8 human 7027 TFDP1 transcription factor Dp-1 XM_017020720.2 76.6% 74.8% (many diffs)
9 human 7027 TFDP1 transcription factor Dp-1 XM_017020721.1 76.6% 74.8% (many diffs)
10 human 7027 TFDP1 transcription factor Dp-1 XM_024449405.1 75.6% 73.9% (many diffs)
11 human 7027 TFDP1 transcription factor Dp-1 XM_011537519.1 65.9% 64.4% (many diffs)
12 human 7027 TFDP1 transcription factor Dp-1 XM_011537520.2 65.9% 64.4% (many diffs)
13 human 7027 TFDP1 transcription factor Dp-1 XM_024449404.1 65.9% 64.4% (many diffs)
14 human 7027 TFDP1 transcription factor Dp-1 XM_017020722.2 58.8% 57% (many diffs)
15 human 7027 TFDP1 transcription factor Dp-1 NR_026580.1 42.9% (many diffs)
16 mouse 21781 Tfdp1 transcription factor Dp 1 NM_001291765.1 86.6% 94.1% (many diffs)
17 mouse 21781 Tfdp1 transcription factor Dp 1 NM_009361.3 86.6% 94.1% (many diffs)
18 mouse 21781 Tfdp1 transcription factor Dp 1 XM_006508751.3 86.6% 94.1% (many diffs)
19 mouse 21781 Tfdp1 transcription factor Dp 1 XM_017312657.1 86.2% 93.6% (many diffs)
20 mouse 21781 Tfdp1 transcription factor Dp 1 XM_017312658.1 86.2% 93.6% (many diffs)
21 mouse 21781 Tfdp1 transcription factor Dp 1 XM_017312659.1 86.2% 93.6% (many diffs)
22 mouse 21781 Tfdp1 transcription factor Dp 1 NM_001291766.1 61.1% 66.8% (many diffs)
23 mouse 21781 Tfdp1 transcription factor Dp 1 NM_001291768.1 61.1% 66.8% (many diffs)
24 mouse 21781 Tfdp1 transcription factor Dp 1 XM_006508754.1 61.1% 66.8% (many diffs)
25 mouse 21781 Tfdp1 transcription factor Dp 1 XM_006508755.1 61.1% 66.8% (many diffs)
26 mouse 21781 Tfdp1 transcription factor Dp 1 XM_006508758.3 61.1% 66.8% (many diffs)
27 mouse 21781 Tfdp1 transcription factor Dp 1 XM_011242048.1 61.1% 66.8% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1296
ORF length:
1230
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatggc agaagatgcc ggtctaattg aagccaacgg agaactcaag gtcttcatag
121accagaacct tagtcccggg aaaggcgtgg tgtccctcgt ggccgttcac ccctccaccg
181tcaacccgct cgggaagcag ctcttgccaa aaacctttgg acagtccaat gtcaacattg
241cccagcaagt ggtaattggt acgcctcaga gaccggcagc gtcaaacacc ctggtggtag
301gaagcccaca cacccccagc actcactttg cctctcagaa ccagccttcc gactcctcac
361cttggtctgc cgggaagcgc aacaggaaag gagagaagaa tggcaagggc ctacggcatt
421tctccatgaa ggtctgcgag aaggtgcaga ggaaagggac cacttcctac aacgaagtgg
481cagacgagct ggttgcggag ttcagtgctg ccgacaacca catcttacca aacgagtcag
541cttatgacca gaaaaacata agacggcgcg tctacgatgc cttaaacgtg ctaatggcca
601tgaacatcat ctccaaggag aagaaggaga tcaagtggat tggtctgccc accaactcgg
661ctcaggaatg tcagaactta gaggtggaaa gacagaggag acttgaaaga ataaaacaga
721aacagtctca acttcaagaa cttattctac agcaaattgc cttcaagaac ctggtgcaga
781gaaaccggca tgcggagcag caggccagcc ggccaccgcc acccaactca gtcatccacc
841tgcccttcat catcgtcaac accagcaaga agacggtcat cgactgcagc atctccaatg
901acaaatttga gtatctgttt aattttgaca acacatttga aatccacgat gacatagaag
961tgctgaagcg gatgggcatg gcttgcgggc tggagtcggg gagctgctct gccgaagacc
1021ttaaaatggc cagaagtctg gtccccaagg ctctggagcc atacgtgaca gaaatggctc
1081agggaactgt tggaggcgtg ttcatcacga cggcaggttc cacgtctaac ggcacaaggt
1141tctctgccag tgacctgacc aacggtgcag atgggatgct ggccacaagc tccaatgggt
1201ctcagtacag cggctccagg gtggagactc cggtgtccta cgtcggggag gacgacgagg
1261aggacgatga cttcaacgag aatgacgacg acgcgtgccc aactttcttg tacaaagtgg
1321ttggtaagcc tatccctaac cctctcctcg gtctcgattc tacgtagtaa tgagctagcg
1381ctaaccggtg gcgcgttaag tcgacaatca acctctggat ta

Download FASTA (ORF) (Full)