Construct: ORF ccsbBroad304_07126

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF007052.1_s304c1, BRDN0000403755
Derived from:
ccsbBroadEn_07126
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
VARS1 (7407)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_07126
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 7407 VARS1 valyl-tRNA synthetase 1 NM_006295.3 99.9% 99.9% 151_152delCCinsAG;1335C>T
2 human 7407 VARS1 valyl-tRNA synthetase 1 XM_005249362.2 99.8% 99.8% 151_152delCCinsAG;785_787delAGC;1338C>T
3 human 7407 VARS1 valyl-tRNA synthetase 1 XR_926304.2 71.3% (many diffs)
4 human 7407 VARS1 valyl-tRNA synthetase 1 XM_017011246.1 53.9% 53.9% 0_1ins1746
5 human 7407 VARS1 valyl-tRNA synthetase 1 XM_024446537.1 53.9% 53.9% 0_1ins1746
6 mouse 22321 Vars valyl-tRNA synthetase NM_011690.3 87.7% 93.3% (many diffs)
7 mouse 22321 Vars valyl-tRNA synthetase XM_017317395.1 87.7% 93.3% (many diffs)
8 mouse 22321 Vars valyl-tRNA synthetase XM_017317396.1 62.4% 67% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
3858
ORF length:
3792
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatgtc caccctctac gtctcccctc acccagatgc cttccccagc ctccgagccc
121tcatagccgc tcgctatggg gaggctgggg agggtcccgg atggggagga gcccaccccc
181gcatctgtct ccagccaccc ccgactagca ggactagctt tcccccaccc cgcctgccgg
241ccctggagca ggggcccggt gggctctggg tgtggggggc cacggctgtg gcccagctgc
301tgtggccagc aggcctgggg ggcccagggg gcagccgggc ggctgtcctt gtccaacagt
361gggtcagtta cgccgacacg gagttaatac cagctgcctg tggagcaacg ctgccggccc
421tgggactccg aagctcggcc caggaccccc aggctgtgct gggggccctg ggcagggccc
481tgagcccctt ggaggagtgg cttcggctgc acacctactt ggccggggag gcccccactc
541tggctgacct ggcggctgtc acagccttgc tgctgccttt ccgatacgtc ctagacccac
601ctgcccgccg gatctggaat aatgtgactc gctggtttgt cacgtgtgtc cggcagccag
661aattccgagc cgtgctagga gaagtggttc tatactcagg agccaggcct ctctctcatc
721agccaggccc cgaggctcct gccctcccaa agacagctgc tcagctcaag aaagaggcaa
781agaaacggga gaagctagag aaattccaac agaagcagaa gatccaacag cagcagccac
841ctccagggga gaagaaacca aaaccagaga agagggagaa acgggatcct ggggtcatta
901cctatgacct cccaacccca cccggggaaa agaaagatgt cagtggcccc atgcccgact
961cctacagccc tcggtatgtg gaggctgcct ggtacccttg gtgggagcag cagggcttct
1021tcaagccaga gtatgggcgt cctaatgtgt cagcagcaaa tccccgaggt gtcttcatga
1081tgtgcatccc accccccaat gtgacaggct ccctgcacct gggccatgca ctcaccaacg
1141ccatccagga ctccctgact cgatggcacc gcatgcgtgg ggagaccacc ctgtggaacc
1201ctggctgtga ccatgcaggt attgccaccc aggtggtggt ggagaagaag ctatggcgtg
1261agcagggact gagccggcac cagctgggcc gcgaggcctt tctacaggaa gtctggaagt
1321ggaaggagga gaaaggtgac cggatttacc accagttgaa gaagcttggc agctccttgg
1381actgggatcg agcctgtttt accatggacc ctaaactctc agcagctgtg acagaggcct
1441ttgtccggct tcacgaggaa ggcatcatct atcgcagtac ccgccttgtt aactggtcct
1501gcaccctcaa ctccgccatc tctgacattg aggtggataa gaaggagctg acaggtcgca
1561ccctgctctc cgtgcctggc tacaaggaga aggtggagtt cggggtcctc gtgtcctttg
1621cctataaggt ccaaggctca gatagcgacg aggaggtggt ggtggcaaca actcggatcg
1681agacaatgct gggagatgtg gctgtagctg tgcaccccaa agataccaga taccagcacc
1741tgaaggggaa gaacgtgatc cacccattcc tgtctcggag ccttcccatt gtcttcgatg
1801aatttgtgga catggacttt ggcacaggtg ctgtgaagat cacccccgca catgaccaaa
1861atgactatga agttgggcag cggcacgggc tggaggccat cagcatcatg gactcccggg
1921gggccctcat caatgtgcct ccgcctttcc tgggcctgcc caggtttgag gccaggaaag
1981cggtgctggt ggcgctgaag gagcggggac tgttccgtgg cattgaggac aaccccatgg
2041tggtgccact ttgcaaccgg tcgaaggacg tggtagagcc tctgctgcgg ccgcagtggt
2101acgttcgctg cggggagatg gcccaggctg ccagcgccgc tgtgactcgg ggtgacctcc
2161gcatcctgcc tgaggcccat cagcgcacat ggcatgcctg gatggacaac atccgggagt
2221ggtgcatttc caggcagctg tggtggggcc atcgcatccc agcctacttt gtcactgtca
2281gtgacccagc ggtgccccct ggggaggacc ctgatgggcg gtactgggtg agtggacgca
2341atgaggcgga ggcccgggag aaggcagcca aggagttcgg agtgtcccct gacaagatca
2401gtctccagca agatgaggat gtattggata cctggttctc ctctggcctc ttccccttat
2461ccattttggg ctggcccaac cagtcagaag acctgagtgt gttctacccc gggacactgc
2521tggagaccgg tcatgacatc ctcttcttct gggtggcccg gatggtcatg ctgggcctga
2581agctcacggg caggctgccc tttagagagg tctacctcca tgccatcgtg cgagatgctc
2641acggccggaa gatgagcaag tctctaggca atgtcatcga tcccctggac gtcatctatg
2701gaatctccct gcagggcctc cacaaccagc tgctgaacag caacctggat cccagcgagg
2761tggagaaggc caaagaaggg cagaaagctg acttcccagc ggggattcct gaatgtggca
2821ccgatgctct ccggtttgga ttatgtgcct acatgtccca gggtcgtgac atcaacctgg
2881atgtgaaccg gatactgggt taccgccact tctgcaacaa gctctggaat gccaccaagt
2941ttgcccttcg tggccttggg aagggttttg tgccctcacc cacctcccag cccggaggcc
3001atgagagcct ggtggaccgc tggatccgca gccgcctgac agaggctgtg aggctcagca
3061atcaaggctt ccaggcctac gacttcccgg ccgtcaccac tgcccagtac agcttctggc
3121tctatgagct ctgtgatgtc tacttggagt gcctgaaacc tgtactgaat ggggtggacc
3181aggtggcagc tgagtgtgcc cgccagaccc tgtacacttg cctggacgtt ggcctgcggc
3241tgctctcacc cttcatgccc ttcgtgacgg aggagctgtt ccagaggctg ccccggagga
3301tgccgcaagc tccccctagc ctctgtgtta ccccctaccc ggagccctca gagtgctcct
3361ggaaggaccc cgaggcagaa gccgcccttg agctggcgct aagcatcacg cgagccgtgc
3421gctccctgcg ggccgactac aacctcaccc ggatccggcc tgactgtttc ctggaagtgg
3481cggatgaggc cacgggcgcc ctggcatcgg cggtgtcggg ctacgtgcag gccctggcca
3541gcgcaggtgt ggtggctgtt ctggccctgg gggctcccgc cccccagggt tgcgctgtgg
3601ctctggcttc tgatcgctgc tccatccacc tgcagcttca ggggctggtg gaccctgcac
3661gggagctggg caagctgcaa gccaagcgag ttgaggccca gcggcaggcc cagcgtctgc
3721gggaacgccg tgctgcctcg ggctatcctg tcaaggtgcc gctcgaagtc caggaggcag
3781atgaagccaa gctccaacag acagaagcag agctcaggaa ggtggatgag gccatcgccc
3841tattccagaa gatgctgtgc ccaactttct tgtacaaagt ggttggtaag cctatcccta
3901accctctcct cggtctcgat tctacgtagt aatgagctag cgctaaccgg tggcgcgtta
3961agtcgacaat caacctctgg atta

Download FASTA (ORF) (Full)