Construct: ORF ccsbBroad304_07165
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF017365.1_s304c1, BRDN0000409643
- Derived from:
- ccsbBroadEn_07165
- DNA Barcode:
- None
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ZBTB16 (7704)
Vector Information:
- Vector Backbone:
- pLX_304
- Pol II Cassette 1:
- PGK-BlastR
- Pol II Cassette 2:
- CMV-ccsbBroad304_07165
- Selection Marker:
- BlastR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 7704 | ZBTB16 | zinc finger and BTB domain ... | NM_001018011.2 | 99.9% | 99.8% | 2003T>C |
| 2 | human | 7704 | ZBTB16 | zinc finger and BTB domain ... | NM_001354750.2 | 99.9% | 99.8% | 2003T>C |
| 3 | human | 7704 | ZBTB16 | zinc finger and BTB domain ... | NM_001354751.2 | 99.9% | 99.8% | 2003T>C |
| 4 | human | 7704 | ZBTB16 | zinc finger and BTB domain ... | NM_006006.6 | 99.9% | 99.8% | 2003T>C |
| 5 | human | 7704 | ZBTB16 | zinc finger and BTB domain ... | XM_017018259.1 | 99.9% | 99.8% | 2003T>C |
| 6 | human | 7704 | ZBTB16 | zinc finger and BTB domain ... | NM_001354752.1 | 95.6% | 95.5% | 1365_1366ins87;1916T>C |
| 7 | human | 7704 | ZBTB16 | zinc finger and BTB domain ... | XM_024448681.1 | 73.9% | 71.4% | (many diffs) |
| 8 | human | 7704 | ZBTB16 | zinc finger and BTB domain ... | XM_005271658.5 | 72% | 72% | 1455_1455delTins565 |
| 9 | human | 7704 | ZBTB16 | zinc finger and BTB domain ... | XR_001747955.1 | 70.4% | 1_397del;1665_1761del;2265_2266ins248 | |
| 10 | mouse | 235320 | Zbtb16 | zinc finger and BTB domain ... | NM_001033324.3 | 90.4% | 96.5% | (many diffs) |
| 11 | mouse | 235320 | Zbtb16 | zinc finger and BTB domain ... | NM_001364543.1 | 90.4% | 96.5% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 2085
- ORF length:
- 2019
- Sequence:
-
1 ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag 61 ttggcatgga tctgacaaaa atgggcatga tccagctgca gaaccctagc caccccacgg 121 ggctactgtg caaggccaac cagatgcggc tggccgggac tttgtgcgat gtggtcatca 181 tggtggacag ccaggagttc cacgcccacc ggacggtgct ggcctgcacc agcaagatgt 241 ttgagatcct cttccaccgc aatagtcaac actatacttt ggacttcctc tcgccaaaga 301 ccttccagca gattctggag tatgcatata cagccacgct gcaagccaag gcggaggacc 361 tggatgacct gctgtatgcg gccgagatcc tggagatcga gtacctggag gaacagtgcc 421 tgaagatgct ggagaccatc caggcctcag acgacaatga cacggaggcc accatggccg 481 atggcggggc cgaggaagaa gaggaccgca aggctcggta cctcaagaac atcttcatct 541 cgaagcattc cagcgaggag agtgggtatg ccagtgtggc tggacagagc ctccctgggc 601 ccatggtgga ccagagccct tcagtctcca cttcatttgg tctttcagcc atgagtccca 661 ccaaggctgc agtggacagt ttgatgacca taggacagtc tctcctgcag ggaactcttc 721 agccacctgc agggcccgag gagccaactc tggctggggg tgggcggcac cctggggtgg 781 ctgaggtgaa gacggagatg atgcaggtgg atgaggtgcc cagccaggac agccctgggg 841 cagccgagtc cagcatctca ggagggatgg gggacaaggt tgaggaaaga ggcaaagagg 901 ggcctgggac cccgactcga agcagcgtca tcaccagtgc tagggagcta cactatgggc 961 gagaggagag tgccgagcag gtgccacccc cagctgaggc tggccaggcc cccactggcc 1021 gacctgagca cccagcaccc ccgcctgaga agcatctggg catctactcc gtgttgccca 1081 accacaaggc tgacgctgta ttgagcatgc cgtcttccgt gacctctggc ctccacgtgc 1141 agcctgccct ggctgtctcc atggacttca gcacctatgg ggggctgctg ccccagggct 1201 tcatccagag ggagctgttc agcaagctgg gggagctggc tgtgggcatg aagtcagaga 1261 gccggaccat cggagagcag tgcagcgtgt gtggggtcga gcttcctgat aacgaggctg 1321 tggagcagca caggaagctg cacagtggga tgaagacgta cgggtgcgag ctctgcggga 1381 agcggttcct ggatagtttg cggctgagaa tgcacttact ggctcattca gcgggtgcca 1441 aagcctttgt ctgtgatcag tgcggtgcac agttttcgaa ggaggatgcc ctggagacac 1501 acaggcagac ccatactggc actgacatgg ccgtcttctg tctgctgtgt gggaagcgct 1561 tccaggcgca gagcgcactg cagcagcaca tggaggtcca cgcgggcgtg cgcagctaca 1621 tctgcagtga gtgcaaccgc accttcccca gccacacggc tctcaaacgc cacctgcgct 1681 cacatacagg cgaccacccc tacgagtgtg agttctgtgg cagctgcttc cgggatgaga 1741 gcacactcaa gagccacaaa cgcatccaca cgggtgagaa accctacgag tgcaatggct 1801 gtggcaagaa gttcagcctc aagcatcagc tggagacgca ctatagggtg cacacaggtg 1861 agaagccctt tgagtgtaag ctctgccacc agcgctcccg ggactactcg gccatgatca 1921 agcacctgag aacgcacaac ggcgcctcgc cctaccagtg caccatctgc acagagtact 1981 gccccagcct ctcctccatg cagaagcaca tgaagggcca caagcccgag gagatcccgc 2041 ccgactggag gatagagaag acgtacccct acctgtgcta tgtgtgccca actttcttgt 2101 acaaagtggt tggtaagcct atccctaacc ctctcctcgg tctcgattct acgtagtaat 2161 gagctagcgc taaccggtgg cgcgttaagt cgacaatcaa cctctggatt a