Construct: ORF ccsbBroad304_07183
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF008015.1_s304c1, BRDN0000462335
- Derived from:
- ccsbBroadEn_07183
- DNA Barcode:
- None
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- BRPF1 (7862)
Vector Information:
- Vector Backbone:
- pLX_304
- Pol II Cassette 1:
- PGK-BlastR
- Pol II Cassette 2:
- CMV-ccsbBroad304_07183
- Selection Marker:
- BlastR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 7862 | BRPF1 | bromodomain and PHD finger ... | NM_001003694.2 | 99.9% | 100% | 489C>T;1770C>A;3651C>T |
| 2 | human | 7862 | BRPF1 | bromodomain and PHD finger ... | XM_005265450.1 | 99.8% | 99.9% | (many diffs) |
| 3 | human | 7862 | BRPF1 | bromodomain and PHD finger ... | NM_004634.2 | 99.4% | 99.5% | (many diffs) |
| 4 | human | 7862 | BRPF1 | bromodomain and PHD finger ... | NM_001319050.1 | 99.3% | 99.4% | (many diffs) |
| 5 | human | 7862 | BRPF1 | bromodomain and PHD finger ... | XM_024453741.1 | 97.2% | 97.2% | (many diffs) |
| 6 | human | 7862 | BRPF1 | bromodomain and PHD finger ... | XM_024453742.1 | 97.2% | 97.2% | (many diffs) |
| 7 | human | 7862 | BRPF1 | bromodomain and PHD finger ... | XM_024453743.1 | 97.1% | 97.1% | (many diffs) |
| 8 | human | 7862 | BRPF1 | bromodomain and PHD finger ... | XM_011534101.1 | 96.7% | 96.7% | (many diffs) |
| 9 | human | 7862 | BRPF1 | bromodomain and PHD finger ... | XM_005265449.1 | 96.6% | 96.6% | (many diffs) |
| 10 | human | 7862 | BRPF1 | bromodomain and PHD finger ... | NM_001319049.1 | 91.6% | 91.7% | (many diffs) |
| 11 | human | 7862 | BRPF1 | bromodomain and PHD finger ... | XM_024453744.1 | 89.6% | 89.6% | (many diffs) |
| 12 | human | 7862 | BRPF1 | bromodomain and PHD finger ... | NR_160918.1 | 74.2% | (many diffs) | |
| 13 | human | 7862 | BRPF1 | bromodomain and PHD finger ... | XR_001740257.1 | 67.7% | (many diffs) | |
| 14 | mouse | 78783 | Brpf1 | bromodomain and PHD finger ... | XM_006506786.3 | 91.8% | 98.2% | (many diffs) |
| 15 | mouse | 78783 | Brpf1 | bromodomain and PHD finger ... | NM_001282128.1 | 91.7% | 98.1% | (many diffs) |
| 16 | mouse | 78783 | Brpf1 | bromodomain and PHD finger ... | XM_006506787.3 | 91.3% | 97.7% | (many diffs) |
| 17 | mouse | 78783 | Brpf1 | bromodomain and PHD finger ... | NM_001282127.1 | 91.2% | 97.7% | (many diffs) |
| 18 | mouse | 78783 | Brpf1 | bromodomain and PHD finger ... | XM_006506788.3 | 91.2% | 97.7% | (many diffs) |
| 19 | mouse | 78783 | Brpf1 | bromodomain and PHD finger ... | XM_006506782.3 | 89.3% | 95.5% | (many diffs) |
| 20 | mouse | 78783 | Brpf1 | bromodomain and PHD finger ... | XM_006506783.3 | 89.3% | 95.5% | (many diffs) |
| 21 | mouse | 78783 | Brpf1 | bromodomain and PHD finger ... | XM_006506784.3 | 89.2% | 95.4% | (many diffs) |
| 22 | mouse | 78783 | Brpf1 | bromodomain and PHD finger ... | NM_001282126.1 | 88.8% | 95% | (many diffs) |
| 23 | mouse | 78783 | Brpf1 | bromodomain and PHD finger ... | NM_030178.2 | 88.7% | 94.9% | (many diffs) |
| 24 | mouse | 78783 | Brpf1 | bromodomain and PHD finger ... | XM_006506785.3 | 88.7% | 94.9% | (many diffs) |
| 25 | mouse | 78783 | Brpf1 | bromodomain and PHD finger ... | XM_017321838.1 | 84.2% | 90.5% | (many diffs) |
| 26 | mouse | 78783 | Brpf1 | bromodomain and PHD finger ... | XM_017321839.1 | 83.7% | 90% | (many diffs) |
| 27 | mouse | 78783 | Brpf1 | bromodomain and PHD finger ... | XM_017321837.1 | 81.9% | 88% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 3726
- ORF length:
- 3660
- Sequence:
-
1 ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag 61 ttggcatggg ggtggacttt gatgtgaaga ctttctgcca caacttgcgg gcgactaagc 121 caccatacga gtgcccggtg gagacctgcc gaaaggtcta caagagttac agtggtattg 181 agtaccacct gtaccactat gaccacgaca acccaccacc cccacaacaa actccactcc 241 gcaagcacaa gaaaaagggg cgccagtcac gcccagccaa caagcagtca cccagcccct 301 cagaggtctc acagtcacca ggccgtgagg tgatgagcta tgcacaggcc cagcgcatgg 361 tggaggtgga cttgcatggc cgcgtccacc gcatcagcat ctttgacaac ctggatgtgg 421 tgtcagagga tgaggaagcc cccgaggagg cccctgagaa tggcagcaac aaggagaaca 481 ctgagacacc agctgctact cccaagtcag gcaaacataa gaacaaggag aagcgcaagg 541 actccaacca tcatcaccac cacaatgttt ctgcgagcac cactcccaag ctgccagagg 601 tggtctatcg ggagctggaa caggacaccc ctgatgcccc accccggcca acttcctatt 661 accggtacat cgagaagtct gcagaggagc tggacgagga agtagagtat gacatggacg 721 aggaggacta catctggctg gatatcatga atgagcgtcg gaagacagag ggtgtaagtc 781 ccatcccgca ggagatcttt gagtacctaa tggaccgact ggagaaggag tcgtactttg 841 agagtcataa taaaggcgac cctaatgcgc tagtggacga ggatgctgtt tgctgtatct 901 gcaatgatgg tgagtgccag aacagcaatg tcatcctctt ctgtgacatg tgcaacctgg 961 ccgtgcacca ggagtgctac ggtgtcccct atatccctga gggccagtgg ctgtgccgcc 1021 gttgcctgca gtcaccctct cgtgctgtgg attgtgccct gtgccccaac aagggcggtg 1081 ccttcaagca gacagatgac gggcgctggg cccatgtggt gtgtgccttg tggatccctg 1141 aggtctgctt cgccaacacg gtcttcctag agcctattga cagcattgag cacatcccac 1201 cagctcgctg gaagctcacc tgctacattt gcaaacaacg gggctcaggg gcctgcatcc 1261 agtgccacaa ggccaactgt tacacagctt tccatgtgac atgcgcccag caggctggcc 1321 tttacatgaa gatggagcct gtgcgggaga caggcgccaa cggcacctct ttcagtgtcc 1381 gcaagacagc ctactgcgac atccacacgc ctccaggttc agcacgccga ctgcctgccc 1441 tgtcccacag cgagggtgag gaggatgaag atgaggagga ggatgagggt aagggctgga 1501 gctcagagaa agtcaagaag gccaaggcca agtcccggat caaaatgaag aaggcacgga 1561 agatcctggc agagaagcgg gcagcagcac ctgtggtgtc agtgccctgc atcccaccac 1621 acaggcttag taaaatcacc aaccgcctga ccatccaaag gaagagccag ttcatgcaga 1681 ggctgcacag ctactggaca ctgaagcggc agtcacggaa tggggtccca ttgctacgtc 1741 gcctgcagac acacctgcaa tctcagagga actgtgacca agttgggaga gattctgagg 1801 ataagaactg ggcccttaaa gaacagctca agtcatggca gcggctccgg catgacttgg 1861 agcgagctcg gctgctcgtg gaattgatcc gcaagcggga aaaactcaaa agggagacga 1921 tcaaggttca gcagattgcc atggagatgc agctgactcc tttcctcatc ctccttcgca 1981 aaaccttgga gcagctccaa gagaaggaca caggcaacat cttcagcgag ccggtccctc 2041 tgtctgaggt aaccgaattg gacgaagtac ctgactacct agaccacatc aaaaagccca 2101 tggacttttt caccatgaag cagaacttgg aggcttaccg ctacctgaat tttgatgatt 2161 ttgaggagga cttcaacctc atcgtcagca actgcctcaa gtataacgcc aaggacacca 2221 tcttctaccg ggcagcagtg cggcttcgtg agcagggtgg tgctgtgctc cgccaggccc 2281 ggcgccaggc agaaaaaatg ggcattgact ttgagacggg catgcatatc ccccacagcc 2341 tggctggaga tgaggccaca caccacactg aagatgcagc cgaggaagag cggctggtct 2401 tgctggagaa ccagaagcac ctgccagtgg aagaacagct aaagctgctt ctggagcggc 2461 tggacgaagt gaatgccagc aagcagagtg tgggccgctc acggcgtgca aagatgatca 2521 agaaagagat gacggcactg cggcggaagc ttgcccatca gcgagagacg ggacgtgatg 2581 gccctgagcg gcatggcccc tcgagccggg gtagtctgac accccacccg gcagcctgtg 2641 acaaggatgg gcagacagat agtgcggcag aggagagcag cagccaggag acaagcaaag 2701 gcctgggtcc caacatgtcc tcaacccccg cacatgaggt gggcaggaga acctcagttc 2761 tgttctccaa aaagaacccg aagacagctg gaccgcccaa gaggccgggc cggcccccca 2821 aaaaccggga gagccagatg acccccagcc acggaggcag tcctgtgggg cccccccagc 2881 tccccatcat gagttccctg cgtcagcgca agcggggtag gagcccccgg cccagttcga 2941 gctcagacag cgacagtgat aagtccacag aagacccccc aatggactta ccagccaatg 3001 gcttcagcgg tggaaaccaa ccagtgaaga agagtttctt ggtataccgt aatgactgca 3061 gccttccccg gagcagctca gactctgagt ccagcagcag tagcagtagc agcgctgctt 3121 cagaccggac cagcacaacg ccctcaaaac aaggccgggg caaaccctcc ttctctcggg 3181 gcactttccc agaggacagc agtgaggata cctcaggcac tgagaatgag gcctactccg 3241 tgggcactgg ccgcggcgtg ggccacagca tggtaaggaa gagtctgggc cggggagctg 3301 gctggctgtc agaggatgag gactccccgc tggatgctct ggacctcgtg tgggccaaat 3361 gccgaggcta tccatcatac ccagctctga tcattgatcc aaagatgccc cgagaaggta 3421 tgttccacca tggggttccc atccctgtgc ccccactgga ggtgctgaaa cttggggagc 3481 agatgaccca ggaagcccga gagcatctct acctcgtcct cttctttgac aacaaacgaa 3541 cctggcagtg gctgcccagg accaagctgg ttcctctggg tgtgaaccag gacctagaca 3601 aggagaagat gctggagggc cgcaagtcca acatccgcaa gtcagtacag atcgcctacc 3661 acagggctct gcagcaccgc agcaaggtgc aaggcgagca gagcagtgag accagtgata 3721 gtgattgccc aactttcttg tacaaagtgg ttggtaagcc tatccctaac cctctcctcg 3781 gtctcgattc tacgtagtaa tgagctagcg ctaaccggtg gcgcgttaag tcgacaatca 3841 acctctggat ta