Construct: ORF ccsbBroad304_07183

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF008015.1_s304c1, BRDN0000462335
Derived from:
ccsbBroadEn_07183
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
BRPF1 (7862)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_07183
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 7862 BRPF1 bromodomain and PHD finger ... NM_001003694.2 99.9% 100% 489C>T;1770C>A;3651C>T
2 human 7862 BRPF1 bromodomain and PHD finger ... XM_005265450.1 99.8% 99.9% (many diffs)
3 human 7862 BRPF1 bromodomain and PHD finger ... NM_004634.2 99.4% 99.5% (many diffs)
4 human 7862 BRPF1 bromodomain and PHD finger ... NM_001319050.1 99.3% 99.4% (many diffs)
5 human 7862 BRPF1 bromodomain and PHD finger ... XM_024453741.1 97.2% 97.2% (many diffs)
6 human 7862 BRPF1 bromodomain and PHD finger ... XM_024453742.1 97.2% 97.2% (many diffs)
7 human 7862 BRPF1 bromodomain and PHD finger ... XM_024453743.1 97.1% 97.1% (many diffs)
8 human 7862 BRPF1 bromodomain and PHD finger ... XM_011534101.1 96.7% 96.7% (many diffs)
9 human 7862 BRPF1 bromodomain and PHD finger ... XM_005265449.1 96.6% 96.6% (many diffs)
10 human 7862 BRPF1 bromodomain and PHD finger ... NM_001319049.1 91.6% 91.7% (many diffs)
11 human 7862 BRPF1 bromodomain and PHD finger ... XM_024453744.1 89.6% 89.6% (many diffs)
12 human 7862 BRPF1 bromodomain and PHD finger ... NR_160918.1 74.2% (many diffs)
13 human 7862 BRPF1 bromodomain and PHD finger ... XR_001740257.1 67.7% (many diffs)
14 mouse 78783 Brpf1 bromodomain and PHD finger ... XM_006506786.3 91.8% 98.2% (many diffs)
15 mouse 78783 Brpf1 bromodomain and PHD finger ... NM_001282128.1 91.7% 98.1% (many diffs)
16 mouse 78783 Brpf1 bromodomain and PHD finger ... XM_006506787.3 91.3% 97.7% (many diffs)
17 mouse 78783 Brpf1 bromodomain and PHD finger ... NM_001282127.1 91.2% 97.7% (many diffs)
18 mouse 78783 Brpf1 bromodomain and PHD finger ... XM_006506788.3 91.2% 97.7% (many diffs)
19 mouse 78783 Brpf1 bromodomain and PHD finger ... XM_006506782.3 89.3% 95.5% (many diffs)
20 mouse 78783 Brpf1 bromodomain and PHD finger ... XM_006506783.3 89.3% 95.5% (many diffs)
21 mouse 78783 Brpf1 bromodomain and PHD finger ... XM_006506784.3 89.2% 95.4% (many diffs)
22 mouse 78783 Brpf1 bromodomain and PHD finger ... NM_001282126.1 88.8% 95% (many diffs)
23 mouse 78783 Brpf1 bromodomain and PHD finger ... NM_030178.2 88.7% 94.9% (many diffs)
24 mouse 78783 Brpf1 bromodomain and PHD finger ... XM_006506785.3 88.7% 94.9% (many diffs)
25 mouse 78783 Brpf1 bromodomain and PHD finger ... XM_017321838.1 84.2% 90.5% (many diffs)
26 mouse 78783 Brpf1 bromodomain and PHD finger ... XM_017321839.1 83.7% 90% (many diffs)
27 mouse 78783 Brpf1 bromodomain and PHD finger ... XM_017321837.1 81.9% 88% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
3726
ORF length:
3660
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatggg ggtggacttt gatgtgaaga ctttctgcca caacttgcgg gcgactaagc
121caccatacga gtgcccggtg gagacctgcc gaaaggtcta caagagttac agtggtattg
181agtaccacct gtaccactat gaccacgaca acccaccacc cccacaacaa actccactcc
241gcaagcacaa gaaaaagggg cgccagtcac gcccagccaa caagcagtca cccagcccct
301cagaggtctc acagtcacca ggccgtgagg tgatgagcta tgcacaggcc cagcgcatgg
361tggaggtgga cttgcatggc cgcgtccacc gcatcagcat ctttgacaac ctggatgtgg
421tgtcagagga tgaggaagcc cccgaggagg cccctgagaa tggcagcaac aaggagaaca
481ctgagacacc agctgctact cccaagtcag gcaaacataa gaacaaggag aagcgcaagg
541actccaacca tcatcaccac cacaatgttt ctgcgagcac cactcccaag ctgccagagg
601tggtctatcg ggagctggaa caggacaccc ctgatgcccc accccggcca acttcctatt
661accggtacat cgagaagtct gcagaggagc tggacgagga agtagagtat gacatggacg
721aggaggacta catctggctg gatatcatga atgagcgtcg gaagacagag ggtgtaagtc
781ccatcccgca ggagatcttt gagtacctaa tggaccgact ggagaaggag tcgtactttg
841agagtcataa taaaggcgac cctaatgcgc tagtggacga ggatgctgtt tgctgtatct
901gcaatgatgg tgagtgccag aacagcaatg tcatcctctt ctgtgacatg tgcaacctgg
961ccgtgcacca ggagtgctac ggtgtcccct atatccctga gggccagtgg ctgtgccgcc
1021gttgcctgca gtcaccctct cgtgctgtgg attgtgccct gtgccccaac aagggcggtg
1081ccttcaagca gacagatgac gggcgctggg cccatgtggt gtgtgccttg tggatccctg
1141aggtctgctt cgccaacacg gtcttcctag agcctattga cagcattgag cacatcccac
1201cagctcgctg gaagctcacc tgctacattt gcaaacaacg gggctcaggg gcctgcatcc
1261agtgccacaa ggccaactgt tacacagctt tccatgtgac atgcgcccag caggctggcc
1321tttacatgaa gatggagcct gtgcgggaga caggcgccaa cggcacctct ttcagtgtcc
1381gcaagacagc ctactgcgac atccacacgc ctccaggttc agcacgccga ctgcctgccc
1441tgtcccacag cgagggtgag gaggatgaag atgaggagga ggatgagggt aagggctgga
1501gctcagagaa agtcaagaag gccaaggcca agtcccggat caaaatgaag aaggcacgga
1561agatcctggc agagaagcgg gcagcagcac ctgtggtgtc agtgccctgc atcccaccac
1621acaggcttag taaaatcacc aaccgcctga ccatccaaag gaagagccag ttcatgcaga
1681ggctgcacag ctactggaca ctgaagcggc agtcacggaa tggggtccca ttgctacgtc
1741gcctgcagac acacctgcaa tctcagagga actgtgacca agttgggaga gattctgagg
1801ataagaactg ggcccttaaa gaacagctca agtcatggca gcggctccgg catgacttgg
1861agcgagctcg gctgctcgtg gaattgatcc gcaagcggga aaaactcaaa agggagacga
1921tcaaggttca gcagattgcc atggagatgc agctgactcc tttcctcatc ctccttcgca
1981aaaccttgga gcagctccaa gagaaggaca caggcaacat cttcagcgag ccggtccctc
2041tgtctgaggt aaccgaattg gacgaagtac ctgactacct agaccacatc aaaaagccca
2101tggacttttt caccatgaag cagaacttgg aggcttaccg ctacctgaat tttgatgatt
2161ttgaggagga cttcaacctc atcgtcagca actgcctcaa gtataacgcc aaggacacca
2221tcttctaccg ggcagcagtg cggcttcgtg agcagggtgg tgctgtgctc cgccaggccc
2281ggcgccaggc agaaaaaatg ggcattgact ttgagacggg catgcatatc ccccacagcc
2341tggctggaga tgaggccaca caccacactg aagatgcagc cgaggaagag cggctggtct
2401tgctggagaa ccagaagcac ctgccagtgg aagaacagct aaagctgctt ctggagcggc
2461tggacgaagt gaatgccagc aagcagagtg tgggccgctc acggcgtgca aagatgatca
2521agaaagagat gacggcactg cggcggaagc ttgcccatca gcgagagacg ggacgtgatg
2581gccctgagcg gcatggcccc tcgagccggg gtagtctgac accccacccg gcagcctgtg
2641acaaggatgg gcagacagat agtgcggcag aggagagcag cagccaggag acaagcaaag
2701gcctgggtcc caacatgtcc tcaacccccg cacatgaggt gggcaggaga acctcagttc
2761tgttctccaa aaagaacccg aagacagctg gaccgcccaa gaggccgggc cggcccccca
2821aaaaccggga gagccagatg acccccagcc acggaggcag tcctgtgggg cccccccagc
2881tccccatcat gagttccctg cgtcagcgca agcggggtag gagcccccgg cccagttcga
2941gctcagacag cgacagtgat aagtccacag aagacccccc aatggactta ccagccaatg
3001gcttcagcgg tggaaaccaa ccagtgaaga agagtttctt ggtataccgt aatgactgca
3061gccttccccg gagcagctca gactctgagt ccagcagcag tagcagtagc agcgctgctt
3121cagaccggac cagcacaacg ccctcaaaac aaggccgggg caaaccctcc ttctctcggg
3181gcactttccc agaggacagc agtgaggata cctcaggcac tgagaatgag gcctactccg
3241tgggcactgg ccgcggcgtg ggccacagca tggtaaggaa gagtctgggc cggggagctg
3301gctggctgtc agaggatgag gactccccgc tggatgctct ggacctcgtg tgggccaaat
3361gccgaggcta tccatcatac ccagctctga tcattgatcc aaagatgccc cgagaaggta
3421tgttccacca tggggttccc atccctgtgc ccccactgga ggtgctgaaa cttggggagc
3481agatgaccca ggaagcccga gagcatctct acctcgtcct cttctttgac aacaaacgaa
3541cctggcagtg gctgcccagg accaagctgg ttcctctggg tgtgaaccag gacctagaca
3601aggagaagat gctggagggc cgcaagtcca acatccgcaa gtcagtacag atcgcctacc
3661acagggctct gcagcaccgc agcaaggtgc aaggcgagca gagcagtgag accagtgata
3721gtgattgccc aactttcttg tacaaagtgg ttggtaagcc tatccctaac cctctcctcg
3781gtctcgattc tacgtagtaa tgagctagcg ctaaccggtg gcgcgttaag tcgacaatca
3841acctctggat ta

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